LOCUS BC020165 2186 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens frequently rearranged in advanced T-cell lymphomas 2,
mRNA (cDNA clone MGC:10562 IMAGE:3629702), complete cds.
ACCESSION BC020165
VERSION BC020165.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2186)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2186)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: g Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31317237.
FEATURES Location/Qualifiers
source 1..2186
/db_xref="H-InvDB:HIT000038737"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10562 IMAGE:3629702"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2186
/gene="FRAT2"
/gene_synonym="MGC10562"
/db_xref="GeneID:23401"
/db_xref="HGNC:HGNC:16048"
/db_xref="MIM:605006"
CDS 105..806
/gene="FRAT2"
/gene_synonym="MGC10562"
/codon_start=1
/product="frequently rearranged in advanced T-cell
lymphomas 2"
/protein_id="AAH20165.1"
/db_xref="GeneID:23401"
/db_xref="HGNC:HGNC:16048"
/db_xref="MIM:605006"
/translation="MPCRREEEEEAGEEAEGEEEEDDSFLLLQQSVTLGSSGEVDRLV
AQIGETLQLDAAQDSPASPCAPPGVPLRAPGPLAAAVPTDKARPPAVPLLLPPASAET
VGPAPSGALRCALGDRGRVRGRAAPYCVAEVAAGPSALPGPCRRGWLRDAVTSRRLQQ
RRWTQAGARAGDDDPHRLLQQLVLSGNLIKEAVRRLQRAVAAVAATGPASAPGPGGGR
SGPDRIALQPSGSLL"
BASE COUNT 431 a 618 c 683 g 454 t
ORIGIN
1 cttccgcgtc cgcccctgct ccggcttcgc ccgcagctcc gcgcccgcgg gcaaccaagc
61 ccccagcgaa gcccgcacag ctccgggtgc caggacgggg ggccatgccg tgccggaggg
121 aggaggaaga ggaagccggc gaggaggcgg agggggagga agaggaggac gacagcttcc
181 tcctgctgca gcagtcggtg acgctgggca gctcgggcga ggtggaccgg ctggtggccc
241 agatcggcga gacgctgcag ctggacgcgg cgcaggacag cccggcctcg ccgtgcgcgc
301 ccccgggggt gccgctgcgg gccccggggc ccctggctgc ggcggtgccg acggacaagg
361 cccggccccc ggcggtgccg ctgctgctgc cgcccgcttc ggctgagacg gtgggcccgg
421 cgccctctgg ggccctgcgc tgcgccctag gggaccgcgg ccgcgtgcgc ggacgcgctg
481 cgccctactg cgtggcggag gtcgccgcag gccccagcgc gctgccgggg ccgtgccggc
541 gaggatggct cagggacgcg gtcacctccc gccgcttgca gcagcgccga tggacccaag
601 ccggggcacg cgccggcgac gacgacccgc atcggctcct ccagcagctc gtgctctcgg
661 gaaacctcat caaggaagcc gtgcggagac tccaacgagc cgtcgccgcg gttgcagcca
721 cgggccccgc aagcgcccct gggcccgggg gaggccgcag cggacctgac cgcattgccc
781 tgcagccctc aggctccttg ctctgacgca ggcctcctgg aggaggaagt ggaggccgct
841 gcgtagaccc aacagcgtcc agttcctact aactctgagc tgaagccgac gtcgccagcc
901 tgggagcgac cactttggct gcggggaggc gcgtggggag agatctcaac cagagaagtt
961 accagccgcg gcgaggccgt cggagaaaac ttaagcgtgg agaaatgtat gcgccagggt
1021 gcttccgtgg ggcatgagaa tttcccgggc catccaagcc caaggacctg ggataaactg
1081 ggagaactat ggcagctact tgcatcgact tgtacctcac ttagcccttg ggggcgtcgt
1141 gagcttggat tgtttaagga gggctcaggg gtaggaatcg cgatggcttt ataacaatac
1201 ttgaaaacta acgacacgca tacattttct tattttctgg tggaggagct tagtaagtgg
1261 tgctacaatt gctgtgcaaa gaaattccag aggggagaag aatgtaaaag tttggtggtg
1321 ggtggcttgg cattgcccct ttttcccacc gattcggtgg ctggtgaagg tgggagatgt
1381 gaactccaat taagggactg gagagaggtg aagaattttg caggtgggag atttggattt
1441 gaatgtggac ttgtaaatga cttgaccttg ccatctgtgt tcaaggtcac ggtttgctgt
1501 ggggttcctg ggagagctta ctcaccccgg agtcttttct ttctcttgct ccaagaagag
1561 ccctgttggt gctttaccac cgcttggagt ctcccgagga cacaaacagg cagagaggga
1621 cgtgtaggga gagttctttc ctgttttctg tgctttcctt tttacaggac tcccggaagg
1681 ccactcatgg ccatgccagg agctttctca gaaacagtca taaacgatct cttgagtctc
1741 tttcttgtcc tcccagctga gctttcttat tccacccttt ctggtgtcta taggaatgca
1801 tgagagaccc tggacgtttt tctgctctct tctggccctc catggagcca tgggcctcgg
1861 cctcggcggc tcctcaccct cacaatttat ttcctcctcc cgtgccagcc cttcttttgt
1921 gtctgaaacc ggttttaaaa tgtgactctc ccagagaaga agccgctggc tgtatgaaac
1981 ttgacggcgc ttttgtaagg tgccaccccc aaactttaag gtagctaaac caatttttaa
2041 aagattcaat ggcttgttca tcctccagat gtagctattg atgtacactt cgcaacggag
2101 tgtctgaaat tgtggtggtc ctgatttata ggatttcata attaaaatgt ctgctgaata
2161 aaaaaaaaaa aaaaaaaaaa aaaaaa
//