LOCUS BC020066 3613 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens programmed cell death 6 interacting protein, mRNA (cDNA clone MGC:17003 IMAGE:4340998), complete cds. ACCESSION BC020066 VERSION BC020066.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3613) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3613) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 26 Row: i Column: 21 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 48255927. FEATURES Location/Qualifiers source 1..3613 /db_xref="H-InvDB:HIT000038729" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:17003 IMAGE:4340998" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3613 /gene="PDCD6IP" /gene_synonym="AIP1" /gene_synonym="Alix" /gene_synonym="DRIP4" /gene_synonym="HP95" /gene_synonym="MGC17003" /db_xref="GeneID:10015" /db_xref="HGNC:HGNC:8766" /db_xref="MIM:608074" CDS 109..2715 /gene="PDCD6IP" /gene_synonym="AIP1" /gene_synonym="Alix" /gene_synonym="DRIP4" /gene_synonym="HP95" /gene_synonym="MGC17003" /codon_start=1 /product="programmed cell death 6 interacting protein" /protein_id="AAH20066.1" /db_xref="GeneID:10015" /db_xref="HGNC:HGNC:8766" /db_xref="MIM:608074" /translation="MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAE ELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKG SLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAF LHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLAN QAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIAR LQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGK ATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLA NGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREI LDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQ VKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKER EGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEG LLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTE ILVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIPTPAYQSSPAGGHAPTPP TPAPRTMPPTKPQPPARPPPPVLPANRAPSATAPSPVGAGTAAPAPSQTPGSAPPPQA QGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPYPGPQQPSYPF PQPPQQSYYPQQ" BASE COUNT 1101 a 762 c 760 g 990 t ORIGIN 1 ctgtcagcca gtcagtccgc cagtccgcca gcccagtacc tctctctcct cggccctcgt 61 aagctgtccg cggtctgttt ggcccgaacg gcggcggagg cgctgatcat ggcgacattc 121 atctcggtgc agctgaaaaa gacctcagag gtggacctgg ccaagccgct ggtgaagttc 181 atccagcaga cttacccaag cggcggggaa gagcaggccc agtactgccg cgcggcggag 241 gagctcagca agctgcgccg cgccgcagtc ggtcgtccgc tggacaagca cgagggcgcg 301 ctcgagacgc tcctgagata ttatgatcag atttgttcta ttgaacccaa attcccattt 361 tctgaaaatc agatctgctt gacatttacc tggaaggatg ctttcgataa aggttcactt 421 tttggaggct ctgtaaaact ggctcttgca agcttaggat atgaaaagag ctgtgtgttg 481 ttcaattgtg cagccttagc tagccaaatt gcagcagaac agaacctgga taatgatgaa 541 ggattgaaaa tcgctgctaa acattaccag tttgctagtg gtgccttttt acatattaaa 601 gagacggttt tatctgcctt aagtcgagag ccgaccgtgg acatatctcc agatactgtt 661 gggaccctca gtcttattat gctggcacag gctcaagaag tatttttttt aaaagccaca 721 agagataaaa tgaaagatgc catcatagct aaattggcta atcaggctgc agattatttt 781 ggtgatgctt tcaaacagtg tcaatacaaa gatactctcc ccaaggaggt gttccctgtc 841 ttggctgcaa agcactgtat catgcaggcc aatgctgagt accatcagtc tatcctggca 901 aaacagcaga agaaatttgg agaagaaatt gcaaggttac agcatgcagc agaactgatt 961 aaaacagtgg catctcgcta tgatgaatat gttaatgtga aggatttttc tgacaaaatc 1021 aatcgtgccc ttgctgcagc aaagaaggat aatgacttca tttatcatga tcgagttcca 1081 gaccttaaag atctagatcc tattggcaaa gccacacttg tgaaatctac cccggtcaat 1141 gtacccatca gtcagaaatt tactgatctg tttgagaaga tggttcccgt gtcagtacag 1201 cagtctttgg ctgcctataa tcagaggaaa gccgatttgg ttaacagatc aattgctcag 1261 atgagagaag ccaccacttt ggcaaatggg gtgctagctt cccttaatct tccagcagca 1321 attgaagatg tgtctggaga cactgtacct cagtctatat tgactaaatc cagatctgtg 1381 attgaacagg gaggcatcca gactgttgat cagttgatta aagaactgcc tgaattactg 1441 caacgaaata gagaaatcct agatgagtca ttaaggttgt tggatgaaga agaagcaacc 1501 gataatgatt taagagcaaa atttaaggaa cgttggcaaa ggacaccatc caatgaactg 1561 tataagcctt taagagcaga gggaaccaac ttcagaacag ttttagataa agctgtgcag 1621 gcagatggac aagtgaaaga atgttaccag tctcatcgtg acaccatcgt gcttttgtgt 1681 aagccagagc ctgagctgaa tgctgccatc ccttctgcta atccagcaaa gaccatgcag 1741 ggcagtgagg ttgtaaatgt cttaaaatcc ttattgtcaa atcttgatga agtaaagaag 1801 gaaagagagg gtctggagaa tgacttgaaa tctgtgaatt ttgacatgac aagcaagttt 1861 ttgacagccc tggctcaaga tggtgtgata aatgaagaag ctctttctgt tactgaacta 1921 gatcgagtct atggaggtct tacaactaaa gtccaagaat ctctaaagaa acaggaggga 1981 cttcttaaaa atattcaggt ctcacatcag gaattttcaa aaatgaaaca atctaataat 2041 gaagctaact taagagaaga agttttgaag aatttagcta ctgcatatga caactttgtt 2101 gaacttgtag ctaatttgaa ggaaggcaca aagttttaca atgagttgac tgaaatcctg 2161 gtcaggttcc agaacaaatg cagtgatata gtttttgcac ggaagacaga aagagatgaa 2221 ctcttaaagg acttgcaaca aagcattgcc agagaaccta gtgctccttc aattcctaca 2281 cctgcgtatc agtcctcacc agcaggagga catgcaccaa ctcctccaac tccagcgcca 2341 agaaccatgc cgcctactaa gccccagccc ccagccaggc ctccaccacc tgtgcttcca 2401 gcaaatcgag ctccttctgc tactgctcca tctccagtgg gggctgggac tgctgcgcca 2461 gctccatcac aaacgcctgg ctcagctcct cctccacagg cgcagggacc accctatccc 2521 acctatccag gatatcctgg gtattgccaa atgcccatgc ccatgggcta taatccttat 2581 gcgtatggcc agtataatat gccatatcca ccagtgtatc accagagtcc tggacaggct 2641 ccatacccgg gaccccagca gccttcatac cccttccctc agcccccaca gcagtcttac 2701 tatccacagc agtaatatgt ctgctcagca gctcagctga ttcagatcag agggaaagaa 2761 ataccaaccc tgcaataagt gtactaaact ctacgctctg gttaatgtaa tgtactctcc 2821 tggactgaat gcagtgtata atttctgtct acagctagaa gctgtgcccc agttccacat 2881 ttgattacac atgtgagatt tgctgctgtt gcagtataaa cactaggtat aataggattt 2941 gaaattgcat tacagttcat aaaaattgaa aatgagaaat taaacctgca agtgaaacat 3001 ttgaaacgat tatactttct acataagaca tggttgggac atcagatact tacaaagatg 3061 gtttaagtat ggatactaga gaaaattaag ttttctttct ctttggttta ttgatttggt 3121 ttaatttcca ttatgctatt ttgcataatc aaggcactgt aaatcttata attttaaaat 3181 aaattactta agaacagttg tcattgttat gttttgttat tgattctcat tactgtctaa 3241 ttttttttct ggtattagtc tcattttgta tgtatataag ttaaacagat actgttttta 3301 agtgcatgaa tagtacaagt tattatcaag gatgttttac agggaaatca aaagaatatt 3361 atcatacttt atctttcgta tgctgattag taaacgattt ttgacattta ttttagaaag 3421 tcctataatg tggaagaaac aaacagttgc taccaaagat gatgaaaata aacatacaaa 3481 taaatgtgta tatttaatgt tttattgtta gcttctccag aaaattgatg caaattctgg 3541 taataattct tgcatttttt ccccataacc tggttaaaat aaatacgcca ttggcaataa 3601 aaaaaaaaaa aaa //