LOCUS BC019824 1084 bp mRNA linear HTC 10-JUN-2008 DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, J, mRNA (cDNA clone IMAGE:4454331), with apparent retained intron. ACCESSION BC019824 VERSION BC019824.1 KEYWORDS HTC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1084) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1084) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 42 Row: c Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis This clone has the following problem: retained intron. FEATURES Location/Qualifiers source 1..1084 /db_xref="H-InvDB:HIT000089960" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4454331" /tissue_type="Kidney, hypernephroma" /clone_lib="NIH_MGC_89" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" BASE COUNT 279 a 204 c 298 g 303 t ORIGIN 1 aggaaccctc ttcccttccg cctggtgtgg gcttgggaaa tgggcaagcg gccccagcaa 61 tcatgggagg aactcttgcg ggggagcggt ctgggattcc aaatgggcag gtcacacgaa 121 ggtcacgatg cttctctgca tcctgaaaag ggctggggac agggccagtg ggggtggtaa 181 gggtatttat agcacagtgc ttgaaaaggg aagattaatg tgtaaatata aaggacacac 241 aggctggggg ttggtcagag gcaagaggag ggtgcctctg agcttcaacc cctcccagga 301 acaatgagct caaattggaa gagtccagtg gaatcggggg gatggtgtga gcgcccctgt 361 tcagtctttg acaattgcat acagaaaagc agctggtatg ggtttgggtg tcaatgaaag 421 ggccaaagac tggtggccag ctggtttggg ggatttgggc cattgatagc atctcccagg 481 aacaacgact ttttgcctcc aaagttggat ctagtgatga tcagcaccag caggaaatga 541 catttggtgt ctgcccactg cagccatact gtgacctcca gccagacttc cgcctaattg 601 actccactgg atttgtgctc tgttgagtca gaggctcccg ggggttgggg atcgaggggc 661 gggggtcagc tatgcagccc atcacgtgtg tttttcatct gggatgaaaa agcctggttc 721 tcttttgaaa tgcttgattg tacttattga gctaaacaag tcttggtgac tgttgttgat 781 ttgcctcaaa agttttaagt cctgggtttt cagactactg tgtagcagct gtgtgtttaa 841 catactgtag ctttttctcc cttgggggca catacaaata ggatgtgttg atgtggactc 901 taaactgtaa ttttcctgta actattttgg aatgatgcat atttctaatg tttgttatac 961 ttgtacagag tattgctgtt ggttgctttt tttttttttt aaggaaaaaa tggcctgaaa 1021 acattttttt aaagacttac aaataccaaa tataaaaaaa tgtcaatgca aaaaaaaaaa 1081 aaaa //