LOCUS BC019630 2198 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens synaptojanin 1, mRNA (cDNA clone IMAGE:4940362),
partial cds.
ACCESSION BC019630
VERSION BC019630.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2198)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2198)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 29 Row: o Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 44889476.
FEATURES Location/Qualifiers
source 1..2198
/db_xref="H-InvDB:HIT000089937"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4940362"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2198
/gene="SYNJ1"
/gene_synonym="INPP5G"
/db_xref="GeneID:8867"
/db_xref="HGNC:HGNC:11503"
/db_xref="MIM:604297"
CDS 108..>2198
/gene="SYNJ1"
/gene_synonym="INPP5G"
/codon_start=1
/product="SYNJ1 protein"
/protein_id="AAH19630.1"
/db_xref="GeneID:8867"
/db_xref="HGNC:HGNC:11503"
/db_xref="MIM:604297"
/translation="MAFSKGFRIYHKLDPPPFSLIVETRHKEECLMFESGAVAVLSSA
EKEAIKGTYSKVLDAYGLLGVLRLNLGDTMLHYLVLVTGCMSVGKIQESEVFRVTSTE
FISLRIDSSDEDRISEVRKVLNSGNFYFAWSASGISLDLSLNAHRSMQEQTTDNRFFW
NQSLHLHLKHYGVNCDDWLLRLMCGGVEIRTIYAAHKQAKACLISRLSCERAGTRFNV
RGTNDDGHVANFVETEQVVYLDDSVSSFIQIRGSVPLFWEQPGLQVGSHRVRMSRGFE
ANAPAFDRHFRTLKNLYGKQIIVNLLGSKEGEHMLSKAFQSHLKASEHAADIQMVNFD
YHQMVKGGKAEKLHSVLKPQVQKFLDYGFFYFNGSEVQRCQSGTVRTNCLDCLDRTNS
VQAFLGLEMLAKQLEALGLAEKPQLVTRFQEVFRSMWSVNGDSISKIYAGTGALEGKA
KAGKLKDGARSVTRTIQNNFFDSSKQEAIDVLLLGNTLNSDLADKARALLTTGSLRAS
SKVLKSMCENFYKYSKPKKIRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKLAGI
QEFQDKRSKPTDIFAIGFEEMVELNAGNIVSASTTNQKLWAVELQKTISRDNKYVLLA
SEQLVGVCLFVFIRPQHAPFIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLCFVC
SHFAAGQSQVKKKKK"
BASE COUNT 640 a 402 c 535 g 621 t
ORIGIN
1 gagctgctgc ggccagaccc acgggcagcc gggcgggcgg acgcctccaa gaccagtctc
61 tgcctccgca gcgtcagcgg gagcgggctg cctccgaaga aaggagaatg gcgttcagta
121 aaggattccg gatctatcac aaattggatc ccccaccttt cagcctcata gtggaaacta
181 ggcataagga agaatgtctc atgttcgagt ctggggctgt cgctgtgctc tcatctgcag
241 aaaaagaggc aatcaagggt acatactcca aagtactgga tgcatatgga ctcttaggtg
301 ttctgcggtt aaatcttggt gatactatgt tacattatct ggtcctagtc actggatgta
361 tgtctgttgg aaaaattcaa gaatctgaag ttttccgagt tacttccact gagtttatat
421 cactgcgaat cgattcttca gatgaggatc gcatttcaga agtgcggaaa gttttgaatt
481 caggaaactt ttattttgca tggtctgcat ctggcatcag tctagatttg agtcttaatg
541 cgcatcgtag catgcaagaa cagacaactg ataatagatt tttctggaat cagtctttgc
601 atttgcatct caaacactat ggcgtgaatt gtgatgactg gttattacgt cttatgtgtg
661 gaggagtaga aatcagaaca atttatgctg ctcataaaca ggcgaaggct tgcctcattt
721 caagattaag ctgtgaacga gctgggacca ggtttaatgt ccggggaaca aatgatgatg
781 gtcatgttgc caattttgta gaaacagaac aggttgtgta cttagatgac tcagtttctt
841 ccttcataca aatccgagga tctgttccat tgttctggga gcaaccaggg ttgcaagtgg
901 gatctcatcg tgtccgtatg tcaaggggat ttgaagccaa tgcacctgct tttgacaggc
961 attttagaac acttaagaac ttatatggta aacaaataat agtaaatttg cttggatcta
1021 aggaaggtga acatatgcta agtaaagctt tccagagtca tttgaaagct tctgaacatg
1081 ctgctgatat ccagatggtg aattttgact atcatcaaat ggttaaggga ggaaaggcag
1141 aaaaattaca tagtgttctt aaacctcaag tccagaagtt tctagattat ggattttttt
1201 atttcaatgg aagtgaagtt caaagatgcc agagtggtac agttcgaaca aactgcttgg
1261 attgtcttga tagaacaaat agtgtgcagg catttcttgg cttagagatg ctagctaaac
1321 agttggaagc tcttggttta gctgaaaagc ctcagttggt gactcgcttt caagaagttt
1381 ttcggtcaat gtggtccgtg aatggtgatt caatcagtaa gatatatgca ggaactggag
1441 ctcttgaagg gaaagcgaag gctggaaagt taaaagatgg tgctcgctct gttacccgaa
1501 caattcagaa taacttcttt gacagctcca agcaagaggc cattgatgtt ttgctactgg
1561 gaaatactct gaatagtgat ttagctgaca aagctcgagc acttttaact actggaagtt
1621 tgcgtgcatc ttctaaagta ctaaagagca tgtgtgagaa tttctacaaa tattcaaagc
1681 ctaagaaaat tcgagtatgt gtcggaacct ggaatgtgaa tggtgggaag caatttcgca
1741 gcatagcttt taagaatcag acactcactg actggcttct tgatgcaccc aagttagctg
1801 gcatccagga gtttcaagat aaaagaagta agccaactga tatatttgca attggttttg
1861 aagaaatggt agaattgaat gctggaaaca ttgtgagtgc aagcacaaca aatcagaagc
1921 tctgggctgt agaacttcag aagacaatct ccagagacaa caagtatgtg ctgctggctt
1981 ctgaacagtt ggtgggcgtc tgtttgtttg tttttatcag accacagcat gctcctttta
2041 tcagggatgt tgcagttgat actgtgaaga ctggaatggg aggtgcaact ggaaataagg
2101 gagcagttgc aatccgaatg ctcttccata caaccagcct ttgcttcgtc tgtagccact
2161 ttgctgcagg gcagtcacaa gtcaaaaaaa aaaaaaaa
//