LOCUS BC019299 4739 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens protocadherin gamma subfamily C, 3, mRNA (cDNA clone MGC:4113 IMAGE:2905509), complete cds. ACCESSION BC019299 VERSION BC019299.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4739) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4739) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (13-DEC-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 9 Row: m Column: 24 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 14277674. FEATURES Location/Qualifiers source 1..4739 /db_xref="H-InvDB:HIT000038619" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:4113 IMAGE:2905509" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..4739 /gene="PCDHGC3" /gene_synonym="PC43" /gene_synonym="PCDH-GAMMA-C3" /db_xref="GeneID:5098" /db_xref="HGNC:HGNC:8716" /db_xref="MIM:603627" CDS 115..2919 /gene="PCDHGC3" /gene_synonym="PC43" /gene_synonym="PCDH-GAMMA-C3" /codon_start=1 /product="protocadherin gamma subfamily C, 3" /protein_id="AAH19299.1" /db_xref="GeneID:5098" /db_xref="HGNC:HGNC:8716" /db_xref="MIM:603627" /translation="MVPEAWRSGLVSTGRVVGVLLLLGALNKASTVIHYEIPEEREKG FAVGNVVANLGLDLGSLSARRFRVVSGASRRFFEVNRETGEMFVNDRLDREELCGTLP SCTVTLELVVENPLELFSVEVVIQDINDNNPAFPTQEMKLEISEAVAPGTRFPLESAH DPDVGSNSLQTYELSRNEYFALRVQTREDSTKYAELVLERALDREREPSLQLVLTALD GGTPALSASLPIHIKVLDANDNAPVFNQSLYRARVLEDAPSGTRVVQVLATDLDEGPN GEIIYSFGSHNRAGVRQLFALDLVTGMLTIKGRLDFEDTKLHEIYIQAKDKGANPEGA HCKVLVEVVDVNDNAPEITVTSVYSPVPEDAPLGTVIALLSVTDLDAGENGLVTCEVP PGLPFSLTSSLKNYFTLKTSADLDRETVPEYNLSITARDAGTPSLSALTIVRVQVSDI NDNPPQSSQSSYDVYIEENNLPGAPILNLSVWDPDAPQNARLSFFLLEQGAETGLVGR YFTINRDNGIVSSLVPLDYEDRREFELTAHISDGGTPVLATNISVNIFVTDRNDNAPQ VLYPRPGGSSVEMLPRGTSAGHLVSRVVGWDADAGHNAWLSYSLLGSPNQSLFAIGLH TGQISTARPVQDTDSPRQTLTVLIKDNGEPSLSTTATLTVSVTEDSPEARAEFPSGSA PREQKKNLTFYLLLSLILVSVGFVVTVFGVIIFKVYKWKQSRDLYRAPVSSLYRTPGP SLHADAVRGGLMSPHLYHQVYLTTDSRRSDPLLKKPGAASPLASRQNTLRSCDPVFYR QVLGAESAPPGQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILA SASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD GKAPAGGNGNKKKSGKKEKK" BASE COUNT 1058 a 1404 c 1264 g 1013 t ORIGIN 1 agaaagccat gtcggactcg gcgcccagcg cccaagcgct aacccgctga aagtttctca 61 gcgaaatctc agggacgatc tggaccccgc tgagaggaac tgcttttgag tgagatggtc 121 ccagaggcct ggaggagcgg actggtaagc accgggaggg tagtgggagt tttgcttctg 181 cttggtgcct tgaacaaggc ttccacggtc attcactatg agatcccgga ggaaagagag 241 aagggtttcg ctgtgggcaa cgtggtcgcg aaccttggtt tggatctcgg tagcctctca 301 gcccgcaggt tccgggtggt gtctggagct agccgaagat tctttgaggt gaaccgggag 361 accggagaga tgtttgtgaa cgaccgtctg gatcgagagg agctgtgtgg gacactgccc 421 tcttgcactg taactctgga gttggtagtg gagaacccgc tggagctgtt cagcgtggaa 481 gtggtgatcc aggacatcaa cgacaacaat cctgctttcc ctacccagga aatgaaattg 541 gagattagcg aggccgtggc tccggggacg cgctttccgc tcgagagcgc gcacgatccc 601 gatgtgggaa gcaactcttt acaaacctat gagctgagcc gaaatgaata ctttgcgctt 661 cgcgtgcaga cgcgggagga cagcaccaag tacgcggagc tggtgttgga gcgcgccctg 721 gaccgagaac gggagcctag tctccagtta gtgctgacgg cgttggacgg agggacccca 781 gctctctccg ccagcctgcc tattcacatc aaggtgctgg acgcgaatga caatgcgcct 841 gtcttcaacc agtccttgta ccgggcgcgc gtcctggagg atgcaccctc cggcacgcgc 901 gtggtacaag tccttgcaac ggatctggat gaaggcccca acggtgaaat tatttactcc 961 ttcggcagcc acaaccgcgc cggcgtgcgg caactattcg ccttagacct tgtaaccggg 1021 atgctgacaa tcaagggtcg gctggacttc gaggacacca aactccatga gatttacatc 1081 caggccaaag acaagggcgc caatcccgaa ggagcacatt gcaaagtgtt ggtggaggtt 1141 gtggatgtga atgacaacgc cccggagatc acagtcacct ccgtgtacag cccagtaccc 1201 gaggatgccc ctctggggac tgtcatcgct ttgctcagtg tgactgacct ggatgctggc 1261 gagaacgggc tggtgacctg cgaagttcca ccgggtctcc ctttcagcct tacttcttcc 1321 ctcaagaatt acttcacttt gaaaaccagt gcagacctgg atcgggagac tgtgccagaa 1381 tacaacctca gcatcaccgc ccgagacgcc ggaacccctt ccctctcagc ccttacaata 1441 gtgcgtgttc aagtgtccga catcaatgac aaccctccac aatcttctca atcttcctac 1501 gacgtttaca ttgaagaaaa caacctcccc ggggctccaa tactaaacct aagtgtctgg 1561 gaccccgacg ccccgcagaa tgctcggctt tctttctttc tcttggagca aggagctgaa 1621 accgggctag tgggtcgcta tttcacaata aatcgtgaca atggcatagt gtcatcctta 1681 gtgcccctag actatgagga tcggcgggaa tttgaattaa cagctcatat cagcgatggg 1741 ggcaccccgg tcctagccac caacatcagc gtgaacatat ttgtcactga tcgcaatgac 1801 aatgcccccc aggtcctata tcctcggcca ggtgggagct cggtggagat gctgcctcga 1861 ggtacctcag ctggccacct agtgtcacgg gtggtaggct gggacgcgga tgcagggcac 1921 aatgcctggc tctcctacag tctcttggga tcccctaacc agagcctttt tgccataggg 1981 ctgcacactg gtcaaatcag tactgcccgt ccagtccaag acacagattc acccaggcag 2041 actctcacgg tcttgatcaa agacaatggg gagccttcgc tctccaccac tgctaccctc 2101 actgtgtcag taaccgagga ctctcctgaa gcccgagccg agttcccctc tggctctgcc 2161 ccccgggagc agaaaaaaaa tctcaccttt tatctacttc tttctctaat cctggtttct 2221 gtggggtttg tggtcacagt gttcggagta atcatattca aagtttacaa gtggaagcag 2281 tctagagacc tataccgagc cccggtgagc tcactgtacc gaacaccagg gccctccttg 2341 cacgcggacg ccgtgcgggg aggcctgatg tcgccgcacc tttaccatca ggtgtatctc 2401 accacggact cccgccgcag cgacccgctg ctgaagaaac ctggtgcagc cagtccactg 2461 gccagccgcc agaacacgct gcggagctgt gatccggtgt tctataggca ggtgttgggt 2521 gcagagagcg cccctcccgg acagcaagcc ccgcccaaca cggactggcg tttctctcag 2581 gcccagagac ccggcaccag cggctcccaa aatggcgatg acaccggcac ctggcccaac 2641 aaccagtttg acacagagat gctgcaagcc atgatcttgg cgtccgccag tgaagctgct 2701 gatgggagct ccaccctggg agggggtgcc ggcaccatgg gattgagcgc ccgctacgga 2761 ccccagttca ccctgcagca cgtgcccgac taccgccaga atgtctacat cccaggcagc 2821 aatgccacac tgaccaacgc agctggcaag cgggatggca aggccccagc aggtggcaat 2881 ggcaacaaga agaagtcggg caagaaggag aagaagtaac atggaggcca ggccaagagc 2941 cacagggcgg cctctcccca accagcccag cttctcctta cctgcaccca ggcctcagag 3001 tttcagggct aacccccaga atactggtag gggccaaggc catgctcccc ttgggaaaca 3061 gaaacaagtg cccagtcagc acctacccct tcccccccag ggggttgaat atgcaaaagc 3121 agttccgctg ggaaccccca tccaatcaac tgctgtaccc atgggggtag tggggttact 3181 gtagacacca agaaccattt gccacacccc gtttagttac agctgaactc ctccatcttc 3241 caaatcaatc aggcccatcc atcccatgcc tccctcctcc ccaccccact ccaacagttc 3301 ctctttcccg agtaaggtgg ttggggtgtt gaagtaccaa gtaacctaca agcctcctag 3361 ttctgaaaag ttggaagggc atcatgacct cttggcctct cctttgattc tcaatcttcc 3421 cccaaagcat ggtttggtgc cagccccttc acctccttcc agagcccaag atcaatgctc 3481 aagttttgga ggacatgatc accatcccca tggtactgat gcttgctgga tttagggagg 3541 gcattttgct accaagcctc ttcccaacgc cctggggacc agtcttctgt tttgtttttc 3601 attgtttgac gtttccactg catgccttga cttcccccac ctcctcctca aacaagagac 3661 tccactgcat gttccaagac agtatggggt ggtaagataa ggaagggaag tgtgtggatg 3721 tggatggtgg gggcatggac aaagcttgac acatcaagtt atcaaggcct tggaggaggc 3781 tctgtatgtc ctcaggggac tgacaacatc ctccagattc cagccataaa ccaataacta 3841 ggctggaccc ttcccactac ataatagggc tcagcccagg cagccagctt tgggctgagc 3901 taacaggacc aatggattaa actggcattt cagtccaagg aagctcgaag caggtttagg 3961 accaggtccc cttgagaggt cagaggggcc tctgtgggtg ctgggtactc cagaggtgcc 4021 actggtggaa gggtcagcgg agccccagca ggaagggtgg gccagccagg ccattcttag 4081 tccctgggtt ggggaggcag ggagctaggg cagggaccaa atgaacagaa agtctcagcc 4141 caggatgggg cttcttcaac agggcccctg ccctcctgaa gcctcagtcc ttcaccttgc 4201 caggtgccgt ttctcttccg tgaaggccac tgcccaggtc cccagtgcgc cccctagtgg 4261 ccatagcctg gttaaagttc cccagtgcct ccttgtgcat agaccttctt ctcccacccc 4321 cttctgcccc tgggtccccg gccatccagc ggggctgcca gagaacccca gacctgccct 4381 tacagtagtg tagcgccccc tccctctttc ggctggtgta gaatagccag tagtgtagtg 4441 cggtgtgctt ttacgtgatg gcgggtgggc agcgggcggc gggctccgcg cagccgtctg 4501 tccttgatct gcccgcggcg gcccgtgttg tgttttgtgc tgtgtccacg cgctaaggcg 4561 accccctccc ccgtactgac ttctcctata agcgcttctc ttcgcatagt cacgtagctc 4621 ccaccccacc ctcttcctgt gtctcacgca agttttatac tctaatattt atatggcttt 4681 ttttcttcga caaaaaaata ataaaacgtt tcttctgaaa aaaaaaaaaa aaaaaaaaa //