LOCUS BC019290 1401 bp mRNA linear HUM 07-AUG-2008 DEFINITION Homo sapiens claudin 5, mRNA (cDNA clone MGC:4051 IMAGE:2822745), complete cds. ACCESSION BC019290 VERSION BC019290.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1401) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1401) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (13-DEC-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 9 Row: g Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 38570041. FEATURES Location/Qualifiers source 1..1401 /db_xref="H-InvDB:HIT000089898" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:4051 IMAGE:2822745" /tissue_type="Lung, small cell carcinoma" /clone_lib="NIH_MGC_7" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1401 /gene="CLDN5" /gene_synonym="BEC1" /gene_synonym="CPETRL1" /db_xref="GeneID:7122" /db_xref="HGNC:HGNC:2047" /db_xref="MIM:602101" CDS 145..801 /gene="CLDN5" /gene_synonym="BEC1" /gene_synonym="CPETRL1" /codon_start=1 /product="claudin 5" /protein_id="AAH19290.2" /db_xref="GeneID:7122" /db_xref="HGNC:HGNC:2047" /db_xref="MIM:602101" /translation="MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQ TTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGA QCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYEL GAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATGDYDKKNYV " BASE COUNT 220 a 450 c 481 g 250 t ORIGIN 1 gaggtgcgac agacccgcgg ggcaaacgga ctggggccaa gagccgggag cgcgggcgca 61 aaggcaccag ggcccgccca gggcgccgcg cagcacggcc ttgggggttc tgcgggcctt 121 cgggtgcgcg tctcgcctct agccatgggg tccgcagcgt tggagatcct gggcctggtg 181 ctgtgcctgg tgggctgggg gggtctgatc ctggcgtgcg ggctgcccat gtggcaggtg 241 accgccttcc tggaccacaa catcgtgacg gcgcagacca cctggaaggg gctgtggatg 301 tcgtgcgtgg tgcagagcac cgggcacatg cagtgcaaag tgtacgactc ggtgctggct 361 ctgagcaccg aggtgcaggc ggcgcgggcg ctcaccgtga gcgccgtgct gctggcgttc 421 gttgcgctct tcgtgaccct ggcgggcgcg cagtgcacca cctgcgtggc cccgggcccg 481 gccaaggcgc gtgtggccct cacgggaggc gtgctctacc tgttttgcgg gctgctggcg 541 ctcgtgccac tctgctggtt cgccaacatt gtcgtccgcg agttttacga cccgtctgtg 601 cccgtgtcgc agaagtacga gctgggcgca gcgctgtaca tcggctgggc ggccaccgcg 661 ctgctcatgg taggcggctg cctcttgtgc tgcggcgcct gggtctgcac cggccgtccc 721 gacctcagct tccccgtgaa gtactcagcg ccgcggcggc ccacggccac cggcgactac 781 gacaagaaga actacgtctg agggcgctgg gcacggccgg gcccctcctg ccagccacgc 841 ctgcgaggcg ttggataagc ctggggatcc ccgcatggac cgcggcttcc gccgggtagc 901 gcggcgcgca ggctcctcgg aacgtccggc tctgcgcccc gacgcggctc ctggatccgc 961 tcctgcctgc gcccgcagct gaccttctcc tgccactagc ccggccctgc ccttaacaga 1021 cggaatgaag tttccttttc tgtgcgcggc gctgtttcca taggcagagc gggtgtcaga 1081 ctgaggattt cgcttcccct ccaagacgct gggggtcttg gctgctgcct tacttcccag 1141 aggctcctgc tgacttcgga ggggcggatg cagagcccag ggcccccacc ggaagatgtg 1201 tacacctggt ctttactcca tcggcagggc ccgagcccag ggaccagtga cttggcctgg 1261 acctcccggt ctcactccag catctcccca ggcaaggctt gtgggcaccg gagcttgaga 1321 gagggcggga gtgggaaggc taagaatctg cttagtaaat ggtttgaact ctcaaaaaaa 1381 aaaaaaaaaa aaaaaaaaaa a //