LOCUS BC019270 1892 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens CDC42 effector protein (Rho GTPase binding) 3, mRNA
(cDNA clone MGC:3481 IMAGE:2823261), complete cds.
ACCESSION BC019270
VERSION BC019270.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1892)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1892)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: o Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30089964.
FEATURES Location/Qualifiers
source 1..1892
/db_xref="H-InvDB:HIT000038593"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3481 IMAGE:2823261"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1892
/gene="CDC42EP3"
/gene_synonym="BORG2"
/gene_synonym="CEP3"
/gene_synonym="UB1"
/db_xref="GeneID:10602"
/db_xref="HGNC:HGNC:16943"
/db_xref="MIM:606133"
CDS 438..1202
/gene="CDC42EP3"
/gene_synonym="BORG2"
/gene_synonym="CEP3"
/gene_synonym="UB1"
/codon_start=1
/product="CDC42 effector protein (Rho GTPase binding) 3"
/protein_id="AAH19270.1"
/db_xref="GeneID:10602"
/db_xref="HGNC:HGNC:16943"
/db_xref="MIM:606133"
/translation="MPAKTPIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHI
GKEGQHDVFGDISFLQGNYELLPGNQEKAHLGQFPGHNEFFRANSTSDSVFTETPSPV
LKNAISLPTIGGSQALMLPLLSPVTFNSKQESFGPAKLPRLSCEPVMEEKAQEKSSLL
ENGTVHQGDTSWGSSGSASQSSQGRDSHSSSLSEQYPDWPAEDMFDHPTPCELIKGKT
KSEESLSDLTGSLLSLQLDLGPSLLDEVLNVMDKNK"
BASE COUNT 525 a 462 c 434 g 471 t
ORIGIN
1 ctctcgcggc cgggggaccg cagcgcgggg ctagcccgga gacccggcca ccggcctggg
61 gcgccttcac gccgtctcgg agcggataat gcggtgagca ggcaccacgc cggcagactc
121 ggctggatct gcgcacagcg gcagggattg cgtgcgcccg cgggaggccc ggggcagcgg
181 ctgggatcct cagcggcggc cggtttgtcc tggttgtggt caagactgga tgatgtaact
241 ggctctctag gaagcctcac ttggccgtaa cctcaggaag gttctctttg accccatctc
301 atttcgaagc cacttctgaa gccacttgag aaaaatgatg tgacagttcc tatcaaaaag
361 gattcagaaa catataccat ctgtgaagaa agtggccctt tctcccgctt gcaaaataga
421 cattctcaaa ttccaaaatg ccagccaaga ccccaattta cctgaaagca gccaataaca
481 agaaaggaaa gaaatttaaa ctgagggaca ttctgtctcc tgatatgatc agtcccccgc
541 ttggagactt tcgccacacc atccacattg gcaaagaggg ccagcacgat gtctttggag
601 atatttcctt tcttcaaggg aactacgagc ttttacctgg aaaccaggag aaagcacacc
661 tgggccagtt ccctgggcat aatgagttct tccgggccaa cagcacctcg gactctgtgt
721 tcacagaaac gccctccccg gtgctcaaaa atgccatctc cctcccgacc attggaggat
781 cccaagctct catgttgccc ttattgtcac cagtgacatt taattccaaa caggagtcct
841 tcgggccagc aaagctgccc aggcttagct gcgagcccgt catggaggaa aaagctcagg
901 agaaaagcag tctgttggag aatgggacag tccaccaggg agacacctcg tggggctcca
961 gcggttctgc atctcagtcc agccaaggca gagacagcca ctcctccagc ctgtccgaac
1021 agtaccccga ctggccagcc gaggacatgt ttgaccatcc caccccatgc gagctcatca
1081 agggaaagac taagtcagag gagtccctct ctgaccttac aggttccctc ctctccctgc
1141 agcttgatct tgggccctca cttttggatg aggtgctgaa tgtaatggat aaaaataagt
1201 aacaagatgc caactttttt cctttggggt aaaaggtaca aaaacaaact aaccacagtt
1261 gaagagaagg gcttccggag ctgtatttgc agttttgtgt tgggttttct aaaataatat
1321 tcttacaaag tattttttta cctgttatgc cctgtttgca aaaacaattt agaaaaaaac
1381 aacaaagcaa aacctatctt ggcaaaaaaa ggaagtgagt cagagcccat tttcaggagg
1441 cattggtgat gttcggctca catattgttt gcagacacac aagaaatctg gcttggccag
1501 gattggcact agctatgaag ggctgagcga gtcacattaa ggaacttcac ggaactttat
1561 agcactccga cattttctga gcaagaggaa gtcaaaattt atttaacacc taagcctttt
1621 tgtagactct tttctatata ttgcttaggc tcaccatagc gaattctcca gtgttaaaac
1681 ttttctgttt tcacatttga actttatggg ttttggggat tttcttgtag ttcttatata
1741 tccctatata ttatatctat attgcaaaat tttgactgtc agctacatgt tggtaagaca
1801 caggcaaagt attactgtaa ctaagttatt tttaaagtta aaatatattt ttacgtgcct
1861 ttggcaaaaa aaaaaaaaaa aaaaaaaaaa aa
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