LOCUS BC019090 3798 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens TSR1, 20S rRNA accumulation, homolog (S. cerevisiae),
mRNA (cDNA clone IMAGE:4896567), partial cds.
ACCESSION BC019090
VERSION BC019090.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3798)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3798)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC019090.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: j Column: 10.
FEATURES Location/Qualifiers
source 1..3798
/db_xref="H-InvDB:HIT000038543"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4896567"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..3798
/gene="TSR1"
/gene_synonym="FLJ10534"
/gene_synonym="KIAA1401"
/db_xref="GeneID:55720"
/db_xref="HGNC:HGNC:25542"
CDS <1..2280
/gene="TSR1"
/gene_synonym="FLJ10534"
/gene_synonym="KIAA1401"
/codon_start=1
/product="TSR1 protein"
/protein_id="AAH19090.2"
/db_xref="GeneID:55720"
/db_xref="HGNC:HGNC:25542"
/translation="KELSRVDQRHRASQLRKQKKEAVLAEKRQLGGKDGPPHQVLVVP
LHSRISLPEAMQLLQDRDTGTVHLNELGNTQNFMLLCPRLKHRWFFTSARPGDLHVVL
DMAKVADTILFLLDPLEGWDSTGDYCLSCLFAQGLPTYTLAVQGISGLPLKKQIDTRK
KLSKAVEKRFPHDKLLLLDTQQEAGMLLRQLANQKQQHLAFRDRRAYLFAHAVDFVPS
EENNLVGTLKISGYVRGQTLNVNRLLHIVGYGDFQMKQIDAPGDPFPLNPRGIKPQKD
PDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVIPDPMEGEQTWPTEEELSEA
KDFLKEGSKVVKKVPKGTSSYQAEWILDGGSQSGGEGDEYEYDDMEHEDFMEEESQDE
SSEEEEEYETMTIGESVHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPDEVDTPRDVA
ARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEKEVEGAE
VGWYVTLHVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAK
EELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFK
QKSNGMHSLIATGHLMSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFK
PVELRTKWGRRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPE
PVPWLKSEISSTVPQGGME"
BASE COUNT 1100 a 811 c 938 g 949 t
ORIGIN
1 aaagaactca gcagagtcga ccagaggcat cgcgccagcc agctccgaaa gcagaagaag
61 gaggcggttc tggcagagaa gagacagctg ggtggcaagg atggccctcc tcatcaggta
121 ctggtggtgc ccctgcacag cagaatttcc ctgccagagg ccatgcagct gcttcaagat
181 agggacactg gaacagtaca cttgaatgaa ttgggaaaca cccagaactt tatgctgctg
241 tgcccccgct tgaaacatcg gtggtttttc acctcagcaa ggccagggga tctgcacgtc
301 gtgttagaca tggctaaagt agctgatacc atcctgttcc tccttgatcc actagaaggc
361 tgggacagca ccggtgatta ctgtctttcc tgcctctttg ctcagggcct tccgacctat
421 acactagctg tccaggggat ttctggcctc ccactgaaga aacaaataga taccaggaag
481 aagctaagta aagcagtgga gaagcgcttt ccgcatgaca aactcctctt gttagacact
541 caacaggagg cagggatgct gcttaggcag ttggctaacc agaagcaaca gcatcttgct
601 tttcgagatc ggcgggccta cctatttgcc catgctgttg attttgttcc tagtgaagag
661 aataacttgg tgggcacctt gaaaatttca ggctatgttc gagggcagac tctgaatgtc
721 aataggttgc tgcatatcgt tggatatggt gatttccaga tgaaacagat agatgccccc
781 ggagaccctt tccctttaaa tcctagagga attaaacccc aaaaggaccc agacatggca
841 atggagattt gtgctacgga tgctgtagat gatatggaag aaggtcttaa agtcctaatg
901 aaggcagacc ctggtagaca ggaatccttg caagcagagg ttatcccaga tccaatggag
961 ggagagcaaa cctggcccac tgaggaggag ctgagcgagg caaaggattt cttgaaggaa
1021 ggttctaagg tggtaaagaa ggtccccaaa ggaacatcca gttaccaagc tgaatggatt
1081 ttggatggtg gcagccaaag tggtggggaa ggagatgaat atgaatatga tgatatggaa
1141 catgaggatt ttatggagga ggaatctcag gatgagagta gtgaagaaga ggaagaatat
1201 gaaactatga ctattgggga gtctgtgcat gatgatctgt atgataagaa agtagatgaa
1261 gaagctgagg caaaaatgtt ggagaaatat aaacaagaaa gactggaaga gatgtttcca
1321 gatgaagtgg acacgccccg tgatgtggct gctcgaattc gatttcagaa atacagaggc
1381 cttaagagct tccggacatc tccatgggat cctaaggaaa accttcctca agattatgct
1441 cgaatatttc agtttcagaa ctttactaac actaggaaaa gcatctttaa agaggttgaa
1501 gaaaaagagg ttgaaggagc tgaggttggc tggtatgtca cacttcatgt ctctgaagtc
1561 cccgtctcag tggtcgagtg cttcaggcaa ggaacaccct tgattgcatt ttctttacta
1621 cctcatgaac agaagatgtc agtattgaat atggtggtga ggcgtgaccc tggcaacact
1681 gaacctgtga aagccaagga agagctcata tttcactgtg gattcaggcg cttccgagcc
1741 tcacctttat tctctcagca cactgcagcg gacaaacata aattgcagag attcctgact
1801 gctgacatgg ccctggtggc gacagtctat gcgccaatca cttttcctcc tgcatctgtg
1861 ctgcttttca agcaaaaaag caatggaatg cacagcctca ttgctacagg ccatcttatg
1921 tcagtagatc cagacagaat ggtcatcaag agagttgttc tgagtggtca tcctttcaaa
1981 atttttacta agatggcagt agtacgttac atgttcttca acagagagga tgtgctgtgg
2041 tttaaaccag tggaactgag aacgaagtgg ggccggagag gacatatcaa ggaaccttta
2101 ggtacccatg gccacatgaa atgcagcttt gatgggaagc taaaatctca agacacagta
2161 ctgatgaacc tgtataaacg agtcttcccc aaatggactt atgatccata tgtaccagaa
2221 ccagtaccct ggctgaaaag tgagatttct tcaacagtgc ctcaaggggg catggagtaa
2281 tggattcaaa gagattctgt cttaccggtg ccagtcagta ctccagggat gggaggcaca
2341 agttgtgatt gggcaaagtt tattttctat gtcagcctgt cagtccactg ccccattttg
2401 caagactttt ttttagcctt gacaaaatgt ctcagttaag tataaaagtt tttccactac
2461 ttagtccaaa aaaaactatt aaatcttaat gaaatagcca ctctccatta agaatctgat
2521 aactaagagt tgacaatact aggaaacaaa atgtcttcag tatctaaaga cactgaattc
2581 ccaccatttc cttttctgta aattaaacag aaacagactg ataagaagct ggcctttcag
2641 cctgcttcac ccaagttatg gaggaggtta agtctacatt tccaccactg agcacaatac
2701 aaatgttctt tacttctggg gaaacagttt gaaaatgttg agacagcaca gcagccactc
2761 caacaccagc tgtaggttca atgagtagtt tcatcctctc ccacaccagc tgggttgcac
2821 actgttgata tggaagggag taggaattag tgaaagggga gtctagttgg tttacctata
2881 aagttcagat gagaatacgt gtccagtttg aattttctta tcactgtgta cacacgcttc
2941 ccaaagcttt tctttaattc tgactctgct tctgtcaaga gggttgtcat taatacatct
3001 agggtaccct cccatgtcat gaagttacct agtcaggttc ccgtgggtca cttgctactc
3061 ctaagggaag tttcttctgc ctaagaagtt acaccatgct ttgctatttc ttttcttgct
3121 ggagcctcac cttaatttca tcctctgtga cagtgaagat atcatccaca aggtccctga
3181 taataggcca ggtgttcaag ccaatgctgg atttgacacc atctgctatg gtttctggag
3241 gataaagatt gggcatcagt ttccccttca gcttggactg gtagcagtca tctgcatttg
3301 agggttcagc agcatatacc ttcacactag gtttcagagc ctgggaagag gaatattaag
3361 acatcttaac aacaaaccac aacattgcct gcatgtctaa aagaaaatat gggcctggtg
3421 tggtggctca cacctgtaat cccaacactt tgggagcccg aggcgggtgg atcagctgag
3481 gtcaggagtt caagaccagc ctggccaacc tggtgaaatg cagtgtcaac taaaaatagg
3541 aaaatcagcc aggcgtggtg gcagacccct gtaatcccag ctactcaaga ggctgaggta
3601 ggagaatcac ttgaacttgg gaggggtagg ttgcagtgag ctgagatcac accaaaatgg
3661 ggtggggcgc agtggctcac gcctgtaatc ccagcacttt gggaggccga ggtgggcgga
3721 tcacgaggta gggagatcaa gaccatcctg gctaacacgg tgaaaccccg tctctactaa
3781 aaaaaaaaaa aaaaaaaa
//