LOCUS BC019025 1990 bp mRNA linear HTC 11-SEP-2007
DEFINITION Homo sapiens heparan sulfate 6-O-sulfotransferase 1, mRNA (cDNA
clone IMAGE:4559311), with apparent retained intron.
ACCESSION BC019025
VERSION BC019025.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1990)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1990)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 30 Row: h Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..1990
/db_xref="H-InvDB:HIT000089860"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4559311"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
BASE COUNT 446 a 565 c 560 g 419 t
ORIGIN
1 ggcacgaggc tgcattgccg gccttcctcg ggccaactgg cagcccagga gtggggaggc
61 tttggccagg gatgctgcca cttgtgcgtg agtccgcggc tggcccttgg aggtgaccat
121 ccaggcaggc ctggctcaga ctggaagggc tggggaccga gggctcccct gcctctgttc
181 tcctttctga cccactggga tttgctagca ggctgcccca gccccatcac cgaaacacat
241 actcaagagc tcaaatacca ctgctcccac cagcgtacgg attaagttca tcaggcttcc
301 atcggctgga gcatgggacc atagcccctg cccaggagcc gtaccctcgg accacagtgg
361 ctctgtatgg ccaggaactg ggactcgagc tttcagattc tcaactagcc ttggcaaaac
421 agctgtaggt ggcctccctg acaacagaca ctcagccctc cccaccctgg ctctccttgc
481 atttccccat gctccccacc ccctggcaaa aggctggcca tgctctgttc ccagcagccg
541 cgcaggtttc cccactggct gcaatggccc taccaaaagc catgttgcat atccgttgta
601 agcacgtgcc ctgtgccctg tccccattcc ttatgcccta ggaggccaag ctggtgtctc
661 taggagggcc cacacaggca ccctggatcc cccagagagt agattggtgt gctcaggccg
721 caggctgact cagaggtagg gcagtgggct ctgcaggcca cctggctggg gttggtgggg
781 gtcctctctc ctgccccagc ttccactcag ccaccacagt tgccacacca tggggtggag
841 acgtgggtca ccacgggctt gggagcaagc gccttctgca gcacaggaag ccgaagctgg
901 ggtcaggtga ggtcgctacc cctggaggtc tggcataagg gccccaccct caggtctcct
961 acactggccc cattttactt tggggtccaa ggacaggatg gtcaacaggg cagggtggac
1021 agcgtgccag cgccgcgcag ggccacctcc ctgggtggat gcatcacact aaggaagtga
1081 gtgccaaggg gatttagtgg tgtggttctt tcaaagggag gtcagggtca atgggaatct
1141 gctcggacac tcaacatggg ggtgggtgca ctccttggag gaggaggaac acgttcaggg
1201 gattgtgagg tcttgcacaa gccacgtggg gcaccttggc ttcccggcag gaggtggaca
1261 cccagccaga ggcctggctc aaggtgacct caccttcacc atgggcttcc tgggtgcgcg
1321 ggcctgagcg caggttgttt tgtacatatt ggaatatgtg ttaacttatg ccccgcatcc
1381 caactcacac ggaagcacgg gtcttgtctc agtctcttcg ctgcatttgg aaagcagtct
1441 cctctcgggc cagcgccggg ctgaggtgtc cagagtcggc ggcagctggc agtgccctca
1501 tcccccaagt gtccagcctg gcacttccca ttcaggccac ctgctttggg tcaacagttc
1561 ctttgccagc agcatctcct aaattgtaag gactctgtcc accggggccc tcccagggct
1621 gtgaggacgg aaacaggcag ggagtggagc taacagctta gtcaccagga cccccagacc
1681 tgcaaacgtc ccctcctgga aggggaagcc aggaacagca gaactgccca gaaaacaagg
1741 ctgtgaactt ttcgggaact ggaactgttt aacttgaacc caggattgtt taaagcttta
1801 tttatttata gcttcttctt aaaaaaaagt gttgaagaaa ttttttggtt attcatacaa
1861 aaaaatgagt tgatgatgga aaagcaagtc ataatcatct aattgttttt gtctaggtcg
1921 agaatgaatg ttagctgatg aaataaaccc tgacaaggaa aaaaaaaaaa aaaaaaaaaa
1981 aaaaaaaaaa
//