LOCUS BC018942 1884 bp mRNA linear HUM 13-JUN-2005
DEFINITION Homo sapiens synapse defective 1, Rho GTPase, homolog 1 (C.
elegans), mRNA (cDNA clone IMAGE:4139438), partial cds.
ACCESSION BC018942
VERSION BC018942.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1884)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1884)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC018942.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: j Column: 16.
FEATURES Location/Qualifiers
source 1..1884
/db_xref="H-InvDB:HIT000038483"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4139438"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1884
/gene="SYDE1"
/gene_synonym="7h3"
/gene_synonym="FLJ13511"
/db_xref="GeneID:85360"
CDS <1..842
/gene="SYDE1"
/gene_synonym="7h3"
/gene_synonym="FLJ13511"
/codon_start=3
/product="SYDE1 protein"
/protein_id="AAH18942.2"
/db_xref="GeneID:85360"
/translation="AVCLSEDLYPDINVITGILKDYLRELPTPLITQPLYKVVLEAMA
RDPPNRVPPTTEGTRGLLSCLPDVERATLTLLLDHLRLVSSFHAYNRMTPQNLAVCFG
PVLLPARQAPTRPRARSSGPGLASAVDFKHHIEVLHYLLQSWPDPRLPRQSPDVAPYL
RPKRQPPLHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGRDFLPCGRDFLSGPD
YDHVTGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALILDLERELSKQIN
VCL"
BASE COUNT 380 a 598 c 517 g 389 t
ORIGIN
1 cagcggtctg cctatctgag gacctgtacc ccgatatcaa tgtcatcact ggcatcctca
61 aggattatct tcgagagttg cccaccccac tcatcaccca gcccctgtat aaggtggtac
121 tggaggccat ggcccgggac cccccaaaca gagttccccc caccactgag ggcacccgag
181 ggctcctcag ctgcctgcca gatgtggaaa gggccacgct gacgcttctc ctggaccacc
241 tgcgcctcgt ctcctccttc catgcctaca accgcatgac cccacagaac ttggccgtgt
301 gcttcgggcc tgtgctgctg ccggcacgcc aggcgcccac aaggcctcgt gcccgcagct
361 ccggcccagg ccttgccagt gcagtggact tcaagcacca catcgaggtg ctgcactacc
421 tgctgcagtc ttggccagat ccccgcctgc cccgacaatc tccagatgtc gcgccttact
481 tgcgacccaa acgacagcca cctctgcacc tgccgctggc agaccccgaa gtggtgactc
541 ggccccgcgg tcgaggaggc cccgaaagcc ccccgagcaa ccgctacgcc ggcgactgga
601 gcgtttgcgg gcgggacttc ctgccctgtg ggcgggattt cctgtccggg ccagactacg
661 accacgtgac gggcagtgac agcgaggacg aggacgagga ggtcggcgag ccgagggtca
721 ccggtgactt cgaagacgac ttcgatgcgc ccttcaaccc gcacctgaat ctcaaagact
781 tcgacgccct catcctggat ctggagagag agctctccaa gcaaatcaac gtgtgcctct
841 gagccagatg acggggtggg accccggtta gtaaggaccg ggcgcccagt ggctaaggcg
901 gtgccctggt gaccaaggag agccagacct gttgctcagg ccgagctcct ggttgccagc
961 gagttaccac gggaccagtc gcgtgtatgg ctgagactca ttcccagttt ccagggcccg
1021 gtatttggac actagttgcc aagtctgggg cctggggatt ttagggacca gcggttgtga
1081 ccatctttcc tgagcaccaa gggcttcccc ttttgttgcc aaaaaggtag ttctcgcgct
1141 tgctaggctg gcctctcttg cctccccttg gccggggcaa caccagttac tgtgagcatc
1201 accctggtgt ggtgagtcac ctctagtcgg ccctcttgct gctgccaacc aaatcagtat
1261 tagctttgag cactgcactg tttctccctc ccttggacga cacaaagact agcatgaggc
1321 actgtttgtg gggggcagcc cctatcctgg gttccagcat ggacacaggg gtagcctggg
1381 gcttatagag aaacagctgg tttcccctac ccttttccgg ggaagacccc acgattggcc
1441 tctagtcagc aaatggagat aacagagtct ggcctttcca atccccatct ccttgccccc
1501 cccttgcccc ccccccgaaa aaaattgagc acttaaaccc ctcccttttg gagggggccc
1561 cctgaagcgt caggctgggg gcagtctggt acggaacata tttattgcct ccatgcatgt
1621 gtgtatgtgt ctgtgaggac tggtgtgcgt ggacacgtct gaagcaggcg tgtggggctc
1681 tttcagggac cacagaggag ggagcagttt gcagtgccca gccaccctga aatccccaat
1741 aatggtgcct cagtgggccc cagagttcca gtgggagagt acggttccct cctgtctccc
1801 tcttcttttc cgcacctcca tctttgtgga taataaataa atatgcacag gttctgagac
1861 tgaaaaaaaa aaaaaaaaaa aaaa
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