LOCUS BC018778 1575 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein
retention receptor 1, mRNA (cDNA clone MGC:32075 IMAGE:4870476),
complete cds.
ACCESSION BC018778
VERSION BC018778.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1575)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1575)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: k Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32307173.
FEATURES Location/Qualifiers
source 1..1575
/db_xref="H-InvDB:HIT000038453"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:32075 IMAGE:4870476"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1575
/gene="KDELR1"
/gene_synonym="ERD2"
/gene_synonym="ERD2.1"
/gene_synonym="HDEL"
/gene_synonym="PM23"
/db_xref="GeneID:10945"
/db_xref="HGNC:HGNC:6304"
/db_xref="MIM:131235"
CDS 196..834
/gene="KDELR1"
/gene_synonym="ERD2"
/gene_synonym="ERD2.1"
/gene_synonym="HDEL"
/gene_synonym="PM23"
/codon_start=1
/product="KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum
protein retention receptor 1"
/protein_id="AAH18778.1"
/db_xref="GeneID:10945"
/db_xref="HGNC:HGNC:6304"
/db_xref="MIM:131235"
/translation="MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVF
TARYLDLFTNYISLYNTCMKVVYIACSFTTVWLIYSKFKATYDGNHDTFRVEFLVVPT
AILAFLVNHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRT
LYLFNWIWRYHFEGFFDLIAIVAGLVQTVLYCDFFYLYITKVLKGKKLSLPA"
BASE COUNT 319 a 487 c 361 g 408 t
ORIGIN
1 ctcttcccgg ctccagctcc gccgccagct ccagcctttg ctccccctcc caaagtcccc
61 tccccggagc ggagcgcacc tagggtccct cttccgtccc cccagcccag ctacccgttc
121 agaccagcag cctcgggggg cacccccccg ccagcctgcc tccctcccgc tcagccctgc
181 cagggttccc cagccatgaa tctcttccga ttcctgggag acctctccca cctcctcgcc
241 atcatcttgc tactgctcaa aatctggaag tcccgctcgt gcgccggaat ttcagggaag
301 agccaggtcc tgtttgctgt ggtgttcact gcccgatatc tggacctctt caccaactac
361 atctcactct acaacacgtg tatgaaggtg gtctacatag cctgctcctt caccacggtc
421 tggttgattt atagcaagtt caaagctact tacgatggga accatgacac gttcagagtg
481 gagttcctgg tcgttcccac agccattctg gcgttcctgg tcaatcatga cttcacccct
541 ctggagatcc tctggacctt ctccatctac ctggagtcag tggccatctt gccgcagctg
601 ttcatggtga gcaagaccgg cgaggcggag accatcacca gccactactt gtttgcgcta
661 ggcgtttacc gcacgctcta tctcttcaac tggatctggc gctaccattt cgagggcttc
721 ttcgacctca tcgccattgt ggcaggcctg gtccagacag tcctctactg cgatttcttc
781 tacctctata tcaccaaagt cctaaagggg aagaagttga gtttgccggc atagccccgg
841 tcctctccat ctctctcctc ggcagcagcg ggaggcagag gaaggcggca gaagatgaag
901 agctttccca tccaggggtg acttttttaa gaacccacct cttgtgctcc ccatcccgcc
961 tcctgccggg tttcaggggg acagtggagg atccaggtct tggggagctc aggacttggg
1021 ctgtttgtag ttttttgcct tttagacaag aaaaaaaaat ctttccactc tttagttttt
1081 gattctgatg actcgttttt cttctactct gtggccccaa tttttataaa gtgtttttga
1141 gtgtcctatg ggccggggca gggtccaaga tcttttccct tccccaggcc cctcggctcc
1201 ctcccagatc ccacccccag ccccactggt tgccaaacac taaatctgcc gacacccatc
1261 tgccccacct cctgccatgg ccatgaaccg cgacccccac taaatttcta gattggggat
1321 agggagaaag ggaggcccag gaaggtctcc cctgattttt tttcatagta atttttttcc
1381 ccagagtttg aattttttgg tcttctcctg gttttttggc aaattagggg ggcccggggc
1441 tcaagtgcgg gaagggggct ggcccgagga tcccatggct ctcacaccat gtttttgtac
1501 agaactgatg gttgaatctt tgttctcttg aaataaacag aagaaaatga aacctttaaa
1561 aaaaaaaaaa aaaaa
//