LOCUS BC018726 1327 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens CD74 molecule, major histocompatibility complex, class II invariant chain, mRNA (cDNA clone MGC:31825 IMAGE:4853578), complete cds. ACCESSION BC018726 VERSION BC018726.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1327) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1327) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Louis Staudt cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 40 Row: i Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 68448543. FEATURES Location/Qualifiers source 1..1327 /db_xref="H-InvDB:HIT000038424" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:31825 IMAGE:4853578" /tissue_type="Primary B-Cells from Tonsils" /clone_lib="NIH_MGC_48" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1327 /gene="CD74" /gene_synonym="HLADG" /gene_synonym="Ia-GAMMA" /gene_synonym="protein 41" /db_xref="GeneID:972" /db_xref="HGNC:HGNC:1697" /db_xref="MIM:142790" CDS 12..710 /gene="CD74" /gene_synonym="HLADG" /gene_synonym="Ia-GAMMA" /gene_synonym="protein 41" /codon_start=1 /product="CD74 molecule, major histocompatibility complex, class II invariant chain" /protein_id="AAH18726.1" /db_xref="GeneID:972" /db_xref="HGNC:HGNC:1697" /db_xref="MIM:142790" /translation="MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKC SRGALYTGFSILVTLLLAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPK PVSKMRMATPLLMQALPMGALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKG SFPENLRHLKNTMETIDWKVFESWMHHWLLFEMSRHSLEQKPTDAPPKESLELEDPSS GLGVTKQDLGPVPM" BASE COUNT 326 a 431 c 327 g 243 t ORIGIN 1 cagggtccca gatgcacagg aggagaagca ggagctgtcg ggaagatcag aagccagtca 61 tggatgacca gcgcgacctt atctccaaca atgagcaact gcccatgctg ggccggcgcc 121 ctggggcccc ggagagcaag tgcagccgcg gagccctgta cacaggcttt tccatcctgg 181 tgactctgct cctcgctggc caggccacca ccgcctactt cctgtaccag cagcagggcc 241 ggctggacaa actgacagtc acctcccaga acctgcagct ggagaacctg cgcatgaagc 301 ttcccaagcc tcccaagcct gtgagcaaga tgcgcatggc caccccgctg ctgatgcagg 361 cgctgcccat gggagccctg ccccaggggc ccatgcagaa tgccaccaag tatggcaaca 421 tgacagagga ccatgtgatg cacctgctcc agaatgctga ccccctgaag gtgtacccgc 481 cactgaaggg gagcttcccg gagaacctga gacaccttaa gaacaccatg gagaccatag 541 actggaaggt ctttgagagc tggatgcacc attggctcct gtttgaaatg agcaggcact 601 ccttggagca aaagcccact gacgctccac cgaaagagtc actggaactg gaggacccgt 661 cttctgggct gggtgtgacc aagcaggatc tgggcccagt ccccatgtga gagcagcaga 721 ggcggtcttc aacatcctgc cagccccaca cagctacagc tttcttgctc ccttcagccc 781 ccagcccctc ccccatctcc caccctgtac ctcatcccat gagaccctgg tgcctggctc 841 tttcgtcacc cttggacaag acaaaccaag tcggaacagc agataacaat gcagcaaggc 901 cctgctgccc aatctccatc tgtcaacagg ggcgtgaggt cccaggaagt ggccaaaagc 961 tagacagatc cccgttcctg acatcacagc agcctccaac acaaggctcc aagacctagg 1021 ctcatggacg agatgggaag gcacagggag aagggataac cctacaccca gaccccaggc 1081 tggacatgct gactgtcctc tcccctccag cctttggcct tggcttttct agcctattta 1141 cctgcaggct gagccactct cttccctttc cccagcatca ctccccaagg aagagccaat 1201 gttttccacc cataatcctt tctgccgacc cctagttccc tctgctcagc caagcttgtt 1261 atcagctttc agggccatgg ttcacattag aataaaaggt agtaattaga aaaaaaaaaa 1321 aaaaaaa //