LOCUS BC018720 2179 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens pentatricopeptide repeat domain 2, mRNA (cDNA clone
MGC:31807 IMAGE:4552964), complete cds.
ACCESSION BC018720
VERSION BC018720.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2179)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2179)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: e Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20127633
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2179
/db_xref="H-InvDB:HIT000038420"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:31807 IMAGE:4552964"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2179
/gene="PTCD2"
/db_xref="GeneID:79810"
/db_xref="HGNC:HGNC:25734"
CDS 449..1159
/gene="PTCD2"
/codon_start=1
/product="PTCD2 protein"
/protein_id="AAH18720.1"
/db_xref="GeneID:79810"
/db_xref="HGNC:HGNC:25734"
/translation="MKDQHLRGFFSDSTSFNILMDMLFIKGKYKSALQVLIEMKNQDV
KFTKDTYVLAFAICYKLNSPESFKICTTLREEALLKGEILSRRASCFAVALALNQNEM
AKAVSIFSQIMNPESIACINLNIIIHIQSNMLENLIKTLKNAAEGNLSKFVKRHVFSE
EVLAKVREKVKDVPALVAKFDEIYGTLHITGQVTTDSLDAVLCHTPRDRKSHTLLLNK
RMVSRRTFQPLSQSLLAE"
BASE COUNT 644 a 447 c 489 g 599 t
ORIGIN
1 agacagtatg gctgctgcat ttcggccctc gaatcgagtt ctcctgcagg cgctgcagat
61 tttggtgtat cctggggtgg gaggctccgg ctctgtcagc tgccgctgcc ctctcggagc
121 taaaagatac ctacttacag ataatgtggt gaaattaaaa gaatttcaac aaaagaaagt
181 ggctgttgca tgtaatcttt ctggcactaa agaaacgtat tttagaaact tgaaaaagaa
241 actgacccag aacaagctca tcttgaaggg ggagttgata accttactac atttgtgtga
301 gtctcgggac catgtggaac tggctaaaaa tgtcatttac aggtaccatg cagagaacaa
361 aaatttcact ttgggggagt ataaatttgg accgcttttt gtgaggttgt gttacgagtt
421 ggatctcgag gaatctgcag tggagctcat gaaagaccag catttacgag gtttcttctc
481 agactccaca tcattcaata ttttgatgga tatgttattt atcaaaggca aatataaaag
541 tgctttgcaa gtattgatag agatgaaaaa ccaagatgtg aagttcacca aagataccta
601 tgttcttgct tttgcaattt gctacaaact gaatagccct gagtctttca aaatctgtac
661 tacattaaga gaagaagctc tactcaaagg agaaattctc tccaggagag catcctgttt
721 cgctgtggca ttagctctga atcagaatga gatggcaaaa gctgtgtcca ttttttctca
781 aatcatgaat ccagaaagca tagcctgcat taatttaaat attataatcc atatccagtc
841 aaatatgttg gaaaacctga taaagactct aaaaaatgct gcagaaggaa atttatcaaa
901 atttgtgaaa agacatgtgt tctcggagga agtgctggcc aaagtgaggg aaaaagtgaa
961 ggatgtgcct gcccttgtgg ccaaatttga tgagatctat gggacactgc acatcactgg
1021 ccaggtcacc actgattctt tggatgctgt gctctgccac acccccaggg acaggaaatc
1081 tcacacgttg ctattaaaca agaggatggt cagccgtcgc accttccagc cactcagcca
1141 gtccctgttg gctgagtaac cctggtttca gtccacctat ggatctgagg ggcctgcttc
1201 tagtgagtta ttacctttcc taagaagcca ggtatcgcac ttcagcagac agtgtgctga
1261 cacttggtct tctcctgaaa ttcccaaatt cactgaatgg taccatgccg atctctgaga
1321 agttatgttg caccactgtg aaggtctaga tgcaagcttg gctccctcag aaaggcgctt
1381 cccttttgca tggctgagga tccttgaagg aacctggtca gtctccggtt cagcttccga
1441 caccagagtg gaacccagta agcaccatca ggaatgaatt tcactacaag tgtggataac
1501 tctgattttc aaaggagtag ttacttgcaa attacatcct tgctgaattc aggaggttaa
1561 ggaaacgatc catgcaagag aggcccaatc tcaactgtag actgtgtccc agtaagagag
1621 tcacagcttc aggtgtttgc tgaatccagg tctgagatca caatcccacc tgaggacagg
1681 atccgcatat gagagtcgca cattggtata attgatttgt ggtagagctg agattagaat
1741 ccagattcct agtctagtat ccttcccact gtaccacatt atctcttttc agaggggaaa
1801 aaggagcagc tcttaagaaa cagaatacta agggccccca ttactgtgtg gccctgggca
1861 tcctcagttt cctcatttgg taaatgggga taatggtacc gacctcttag gcttggtgtg
1921 aggatgaaat gagataggga atataaagca agcagatagt ggctggcaca tagtacatgc
1981 aatatgtttg aaactagtta aggaattata aaaacaaatg agttcttcct tctgctcaaa
2041 aatattgaat ttcttgtcct tgtgctctgt gaaacattga acagccccat ttagagaaac
2101 aaattctctg ccctcataga atcctaattg tttctgtatg tgtctggtgt tttgcacatg
2161 caaaaaaaaa aaaaaaaaa
//