LOCUS BC018403 3519 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens ubiquilin 4, mRNA (cDNA clone MGC:16849 IMAGE:4214386), complete cds. ACCESSION BC018403 VERSION BC018403.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3519) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3519) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Jul 7, 2004 this sequence version replaced BC018403.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 12 Row: n Column: 16 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40538798. FEATURES Location/Qualifiers source 1..3519 /db_xref="H-InvDB:HIT000089602" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:16849 IMAGE:4214386" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3519 /gene="UBQLN4" /gene_synonym="A1U" /gene_synonym="UBIN" /db_xref="GeneID:56893" /db_xref="HGNC:HGNC:1237" /db_xref="MIM:605440" CDS 13..1818 /gene="UBQLN4" /gene_synonym="A1U" /gene_synonym="UBIN" /codon_start=1 /product="ubiquilin 4" /protein_id="AAH18403.1" /db_xref="GeneID:56893" /db_xref="HGNC:HGNC:1237" /db_xref="MIM:605440" /translation="MAEPSGAETRPPIRVTVKTPKDKEEIVICDRASVKEFKEEISRR FKAQQDQLVLIFAGKILKDGDTLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTP DPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSPSATASILS GFGGILGLGSLGLGSANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHM IMANPQMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIP GGYNALRRMYTDIQEPMFSAAREQFGNNPFSSLAGNSDSSSSQPLRTENREPLPNPWS PSPPTSQAPGSGGEGTGGSGTSQVHPTVSNPFGINAASLGSGMFNSPEMQALLQQISE NPQLMQNVISAPYMRSMMQTLAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQ MQNPESLSILTNPRAMQALLQIQQGLQTLQTEAPGLVPSLGSFGISRTPAPSAGSNAG STPEAPTSSPATPATSSPTGASSAQQQLMQQMIQLLAGSGNSQVQTPEVRFQQQLEQL NSMGFINREANLQALIATGGDINAAIERLLGSQLS" BASE COUNT 806 a 1019 c 916 g 778 t ORIGIN 1 ggcggcggcg gcatggcgga gccgagcggg gccgagacga ggccccccat tcgggtcacc 61 gtcaagaccc ccaaggacaa ggaggaaatt gtgatctgcg atcgagcctc ggtcaaggag 121 ttcaaagagg aaatctcccg gaggtttaag gctcagcagg atcagctggt cctgatcttc 181 gcaggcaaga tcctcaagga tggggacaca ctgaaccagc acggaatcaa ggacgggctc 241 actgtccatc tggtcatcaa gacccctcag aaggctcaag atccagctgc tgccactgct 301 tcttccccct ctacacctga ccctgcctca gcaccctcca ccacgcctgc ttcacccgcc 361 acccctgccc agccctccac ctctggcagt gcctcttcag atgctggcag tggaagccgg 421 aggagcagtg gtggggggcc ctctccgggg gctggggagg gatcccccag tgctactgcg 481 tccatactct ctggctttgg gggcatcctg gggctgggca gcctaggcct gggctctgcc 541 aacttcatgg agctgcagca gcagatgcag cggcagctga tgtccaatcc tgagatgctg 601 tcacagatca tggagaaccc cctggtccag gatatgatgt ctaaccctga tctgatgcgt 661 cacatgatta tggccaaccc ccagatgcag cagttgatgg agcggaaccc tgagatcagc 721 cacatgctca ataaccctga actcatgagg cagacaatgg agcttgctcg gaatccagcc 781 atgatgcaag agatgatgcg gaaccaggac cgggccctga gcaaccttga gagcatccct 841 ggagggtata atgccctccg ccgcatgtac acggacatcc aggagcccat gttcagtgct 901 gcccgggaac agtttggcaa caatcccttc tcttccctgg ccgggaactc cgacagctca 961 tcctcccagc ctctgcggac tgagaatcga gagcccctcc ctaacccctg gagcccctcg 1021 ccccccacct cccaggcccc cgggtccggt ggggagggca ccggaggatc ggggaccagc 1081 caggtgcacc cgacagtctc gaaccccttt gggatcaatg cggctagcct ggggtcaggg 1141 atgttcaata gcccagaaat gcaagccctc ctccagcaga tctctgagaa cccccagctg 1201 atgcagaatg tgatctcagc accctacatg cgcagcatga tgcagacgct tgcccagaac 1261 cccgactttg ctgctcagat gatggtgaat gtgccgctct tcgcggggaa cccccaactg 1321 caggagcagc tccgcctgca gctcccagtc ttcctgcagc agatgcagaa cccagagtca 1381 ctctccatcc ttaccaatcc ccgagccatg caggcattgc tgcagatcca gcagggacta 1441 cagaccttgc agaccgaggc ccctgggctg gtacccagcc ttggctcctt tgggatatcc 1501 cggaccccag caccctcagc aggcagcaac gcagggtcta cgcccgaggc ccccacttcc 1561 tcaccagcca cgccagccac atcttctcca acaggggctt ccagcgccca gcagcaactc 1621 atgcagcaga tgatccagct tttggctgga agtggaaact cacaggtgca gacgccagaa 1681 gtgagatttc agcagcagct ggagcagctc aactccatgg gcttcatcaa tcgtgaggct 1741 aacctgcagg ccctgattgc cacaggaggg gacatcaacg cagctatcga gagactgctg 1801 ggctcccagc tctcctaatc cctcggccca tgcctcctgc ctctcccctc cctcgatgtc 1861 agcattcggt tcttctgtca atccttaccc tctgcagctt gtcctccctt ccgtcttctc 1921 cctcatcctt tccaaacagc agggtgactt tagaggcatg ggctccaacc ccttagctct 1981 gtctgagaat tatggtttta ctgctacgtc tctaacagac tcttctctcc tggtctcctt 2041 gagcagtgct acttaaacag ttttcacagt ttcattgatt gactctacct ccttgcccca 2101 caccactttt gcaatcttta aactttcagt ggctgtgcag agtcgaggga ggaaccagct 2161 ctctggttta ctggaacata gtcttccatc tataccacta gggttttgtc ttatgtttac 2221 ttttggtaac tctcttcctt ctttttctcc ctacccccca acccctagcc caaccaatgc 2281 tagaatttct tgctctgaag gaggagcagg tgaaacaggt ggtaattttc cttctcggcc 2341 cctattctgg ttcattcagc actttttggt gggaactgtt ggaaattcca gggtaaggag 2401 gaagatgcct gttctccctg tctgaagagg gagatgagac agctctctgg acaggaatta 2461 acaaacgctg gagcagccca gaggaaattc gtgtgaaaga ggagggaatg agattattcg 2521 gaggaaggga atgggggaga cagcctgagt aaaaggcttg gaagttggaa ttagcagtgg 2581 ggagcagaag cactcatagc tcttttaggc agaagaatcc aggcccgagc tggcagaaga 2641 gacttagaga tgctaatgga atttaaactg aaaaaaggag cccaatgaag ctaagcgcca 2701 cgccccacaa ggggtcatat tggctttagt tcctcaagca tatgtgctta tatgcacaca 2761 cacacacatt tccatggacc caggtcttgc ttgtgtcccc aggcaccagt agtttgagcc 2821 cccctcaaaa gacatgaagg gggttggggt ctgtgtgagt agtggggagg tgcatgtgta 2881 tccacatgtg tgcatacact cttaagttgg gtgggaagtg gattccttgt tggtttctgg 2941 ttcagagtgc tctcccacca ccagagacaa gtgggtaaaa aggtcagtcc attgcaggaa 3001 tatatatccg ggagagctag gtcccttggg gctctggatg ctgggtaacc cagaggtaat 3061 gtgggtaccc tttctgaagc tgtcagggct gtgactagca cccttatcac ccctcactgc 3121 cttgtgggaa tagtagaggg ttttttttcc tccagagccc ctggcctttc agtttttaac 3181 tatttccctc caggccagaa agttttcttt gaggaaggag aggagagggt ggcaatgatg 3241 cctttgatct ggaattggac atttctctgt cagagcacag aggaggctca tatcacctct 3301 tccctctcct acttggccca gctgcttgga ggaccgaccc catggctgag aatatgacgg 3361 caagaggaac agagtttgct ccaagtggga aagggtccca agcagtccag agaagatgtc 3421 tgtgtggctt tccctccctg cctcccccag ctcccacact ggcctttgta aataaatggc 3481 gtggtctttg taaaaaaaaa aaaaaaaaaa aaaaaaaaa //