LOCUS BC018137 2307 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens TATA box binding protein (TBP)-associated factor, RNA
polymerase I, B, 63kDa, mRNA (cDNA clone MGC:9349 IMAGE:3846611),
complete cds.
ACCESSION BC018137
VERSION BC018137.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2307)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2307)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC018137.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 20 Row: g Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21536364.
FEATURES Location/Qualifiers
source 1..2307
/db_xref="H-InvDB:HIT000038290"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9349 IMAGE:3846611"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_65"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2307
/gene="TAF1B"
/gene_synonym="MGC:9349"
/gene_synonym="RAF1B"
/gene_synonym="RAFI63"
/gene_synonym="SL1"
/gene_synonym="TAFI63"
/db_xref="GeneID:9014"
/db_xref="HGNC:HGNC:11533"
/db_xref="MIM:604904"
CDS 100..1866
/gene="TAF1B"
/gene_synonym="MGC:9349"
/gene_synonym="RAF1B"
/gene_synonym="RAFI63"
/gene_synonym="SL1"
/gene_synonym="TAFI63"
/codon_start=1
/product="TATA box binding protein (TBP)-associated
factor, RNA polymerase I, B, 63kDa"
/protein_id="AAH18137.1"
/db_xref="GeneID:9014"
/db_xref="HGNC:HGNC:11533"
/db_xref="MIM:604904"
/translation="MDLEESEEFKERCTQCAAVSWGLTDEGKYYCTSCHNVTERYQEV
TNTDLIPNTQIKALNRGLKKKNNTEKGWDWYVCEGFQYILYQQAEALKNLGVGPELKN
DVLHNFWKRYLQKSKQAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFL
ESGAESQSDIHTRKPFPVSKASQSETSVCSGSLDGVEYSQRKEKGIVKMTMPQTLAFC
YLSLLWQREAITLSDLLRFVEEDHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYED
IYKKTIEVGTFLDLPRFPDITEDCYLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGM
GEVDFLTFDPIAKMAKAVKYDVQAVAIIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNK
KDKPWFDFRKWYQIMKKAFDEKKQKWEEARAKYLWKSEKPLYYSFVDKPVAYKKREMV
VNLQKQFSTLVDSTATAGKKSPSSFQFNWTEEDTDRTCFHGHSLQGVLKEKGQSLLTK
NSLYWLSTQKFCRCYCTHVTTYEESNYSLSYQFILNLFSFLLRIKTSLLHEEVSLVEK
KLFEKKYSVKRKKSRSKKVRRH"
BASE COUNT 796 a 413 c 465 g 633 t
ORIGIN
1 ctcgcgtttc cggccggaag gcttctccag cctttcccgg aagctgcgct cgctacccgg
61 gtaacgggtc ccggctgtgg aagctcccgc ggcgccgcga tggacctcga ggagtcggaa
121 gagtttaaag aacgctgtac tcagtgtgct gctgtctcat ggggtcttac tgatgaaggc
181 aaatattatt gcacttcttg ccacaatgtt acagagagat atcaggaagt tacaaacact
241 gatcttattc ctaataccca aataaaagcc ctcaaccggg ggcttaaaaa aaaaaacaat
301 actgaaaaag gctgggattg gtatgtgtgt gaaggtttcc agtatattct ttatcaacaa
361 gcagaagcct taaagaacct tggagtaggc ccagagttaa agaacgatgt tttacataat
421 ttttggaagc gctaccttca gaagagcaag caggcatatt gtaagaaccc agtttatacc
481 actggaagga aacctacggt attagaagat aatctaagtc attcagactg ggctagtgag
541 cctgagctgc taagtgatgt cagctgtcct ccttttcttg aaagtggagc ggagtctcag
601 tctgacatcc acactcgaaa acctttcccc gtcagcaaag catcacaatc agaaacgtct
661 gtctgctctg gatctctgga tggagttgaa tactcacaac gaaaggagaa gggaatcgtg
721 aagatgacca tgccacagac acttgccttc tgttatctgt ccttactttg gcagagagaa
781 gcaataacac tttcagatct tttgaggttt gttgaagagg accatattcc ttacataaat
841 gcttttcagc attttccaga acagatgaaa ttatatggac gtgacagagg aatctttggt
901 atagagtctt ggcctgacta cgaggacatc tataaaaaaa caatagaagt tggaacattt
961 ttagatttgc ctcgttttcc agacataact gaagactgct atcttcatcc caacatactg
1021 tgtatgaaat acttgatgga agtcaacctc cctgatgaaa tgcatagctt aacttgccac
1081 gtggtaaaaa tgactggaat gggagaagtg gattttctga catttgatcc tatagccaaa
1141 atggcaaaag ctgttaagta cgatgtacaa gctgtagcta tcattgtggt ggtattgaaa
1201 ctgctctttc tattggatga cagtttcgag tggtctttgt ctaatcttgc tgaaaagcat
1261 aatgaaaaga acaaaaaaga taagccatgg tttgatttca gaaagtggta ccaaattatg
1321 aagaaagctt ttgatgagaa aaaacaaaaa tgggaagaag caagggccaa gtacctgtgg
1381 aaaagtgaaa agccactcta ctactcattt gtcgacaaac cagtagcata taaaaaaaga
1441 gaaatggtgg tgaatctaca gaaacaattt agcacactgg tcgattcaac agcaactgct
1501 ggaaaaaaaa gcccttcaag ttttcagttc aactggactg aagaggacac tgatagaacg
1561 tgtttccatg gacacagcct tcagggagtc ctgaaagaga aaggccaatc actgctgact
1621 aagaattcat tatattggct tagtacacag aaattctgca gatgctattg tacacatgtg
1681 acaacctatg aagaatcaaa ttattctctg agttatcagt ttatactaaa tctcttctcc
1741 ttcctgctca gaataaagac ttcccttctc catgaagaag tgagcttagt tgagaagaaa
1801 ctttttgaga aaaaatacag tgtaaaaaga aagaaatcaa gatccaagaa agtgagacga
1861 cattgagaaa atgaaataga aactttctgg aaaaatattt taatagtgat aataacatca
1921 gattttaata taacattcca gagaattgtg gaaaatactg catatatatg tatagactct
1981 gacacatatt tacatatata tcaagtgtgc ttagaaaaat gtatattgta aagcaggtga
2041 gcttcatttg attttatttt tcagagtatg aacattctaa gagaaagtta aaacaatagc
2101 aaattgtata attgtatcca gaaatgtata ctcatcatat tttaaagcta aatttatttt
2161 ttaaactaga tcccttcatt attctttatg ccccagagta aatcccagat ggatcaaaga
2221 tctaaacata atctttcata tgtaaaaata taaaagtatt agtagaaaac aaatatgaat
2281 gctttgatga aaaaaaaaaa aaaaaaa
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