LOCUS BC017914 1781 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nipsnap homolog 3B (C. elegans), mRNA (cDNA clone
MGC:23845 IMAGE:4292375), complete cds.
ACCESSION BC017914
VERSION BC017914.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1781)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1781)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 36 Row: b Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361742.
FEATURES Location/Qualifiers
source 1..1781
/db_xref="H-InvDB:HIT000038195"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23845 IMAGE:4292375"
/tissue_type="Skeletal Muscle"
/clone_lib="NIH_MGC_81"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1781
/gene="NIPSNAP3B"
/gene_synonym="FLJ11275"
/db_xref="GeneID:55335"
/db_xref="HGNC:HGNC:23641"
/db_xref="MIM:608872"
CDS 72..815
/gene="NIPSNAP3B"
/gene_synonym="FLJ11275"
/codon_start=1
/product="nipsnap homolog 3B (C. elegans)"
/protein_id="AAH17914.1"
/db_xref="GeneID:55335"
/db_xref="HGNC:HGNC:23641"
/db_xref="MIM:608872"
/translation="MLVLRSGLTKALASRTLAPQVCSSFATGPRQYDGTFYEFRTYYL
KPSNMNAFMENLKKNIHLRTSYSELVGFWSVEFGGRTNKVFHIWKYDNFAHRAEVRKA
LANCKEWQEQSIIPNLARIDKQETEITYLIPWSKLEKPPKEGVYELAVFQMKPGGPAL
WGDAFERAINAHVNLGYTKVVGVFHTEYGELNRVHVLWWNESADSRAAGRHKSHEDPR
VVAAVRESVNYLVSQQNMLLIPASFSPLK"
BASE COUNT 543 a 295 c 329 g 614 t
ORIGIN
1 actcgggaag acttcagaga agtctcacaa aggactcggc tggctgcttt tctcagtgcc
61 gaagccgcgc catgctcgtt ctcagaagcg gcctgaccaa ggcgcttgcc tcacggacgc
121 tcgcgcctca ggtgtgttca tcttttgcta cgggccctag acaatacgat ggaacgttct
181 atgaatttcg tacttattac cttaaacctt caaatatgaa tgcgttcatg gaaaatctta
241 agaaaaacat tcatcttcgg acctcttact ctgaattggt tggattctgg agtgtagaat
301 ttggaggcag aacgaataaa gtgtttcata tttggaagta tgataatttt gctcatcgag
361 ctgaagttcg gaaagcctta gccaactgta aggaatggca agaacaatct atcattccaa
421 atttggctcg cattgataaa caagagacgg aaattactta cctgatacca tggtccaaat
481 tagaaaagcc tccaaaagaa ggagtctatg aactagctgt ttttcagatg aaacctggtg
541 ggccagctct gtggggtgat gcatttgaaa gagcaattaa tgcccatgtc aatttaggct
601 acacaaaagt agttggtgtt ttccacacag aatatggaga actcaacaga gttcatgttc
661 tttggtggaa tgagagtgca gatagtcgtg cagctgggag acataagtcc catgaggatc
721 ccagagttgt ggcggctgtt cgggaaagtg tcaactacct agtttctcag cagaatatgc
781 ttctgattcc tgcatcattt tcaccattga aatagttttc tactgaaata caaaacattt
841 cattaactgc tctaagatgt gtctgctaat ggtgcttaaa ttctcccaag aggttctcgc
901 ttttatttga aggaggtggt aagttaatta gttaatttgc tgtgcttctt gcatttttga
961 aagttacata ttctccactg ctttaagaaa taattcagtt cactttcacc ttggcatttc
1021 agtatctgtt acacattaga agtagttgtc actatttcat catcttggtt tttcatttgt
1081 tttagaatac ctcttctgta ttttgataac tcattgcttt atagcatttt cttttactca
1141 aataaggatt ttacatttcc ttgcctgaca gtatttttga attatttata taaaatatct
1201 atcttttcat catgtctata gttcctgaga ttttaaaaaa atttgcttag taaaggttat
1261 tttgtgatat aaaatgggat ttataaaaat attagattgt ttatttcttt actgtggaaa
1321 agtagaatgt catctgtatt aattattgct tttacattca ttgattatta gtcattctaa
1381 cttggaaaat aatgcaattg ggtcacagtg ttaaaaatct agaaaagact tgttggttta
1441 tatgctgaaa ttgttcattt ataattaatt ttactaattt ctccttagtt tggatcacta
1501 acagagatct tgggacattt atttgtttta aagaaatatt tatggttatg gaaacgcttg
1561 ccctaataaa aatcctgcat attcattgtt tttttaaatt cacattttat acttatatga
1621 tctctaaagc tcttgctatg ttgctataag acagtaatat agtgataatt taccaacttt
1681 attgaaaatg ttgttacatc aataaaatag catgctggga acctgagaag gaaggtttct
1741 ttagtactgc caaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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