LOCUS BC017667 2600 bp mRNA linear HUM 30-SEP-2003
DEFINITION Homo sapiens neuron navigator 3, mRNA (cDNA clone IMAGE:3914378),
partial cds.
ACCESSION BC017667
VERSION BC017667.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2600)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2600)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC017667.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 22 Row: m Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27734089.
FEATURES Location/Qualifiers
source 1..2600
/db_xref="H-InvDB:HIT000089356"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3914378"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2600
/gene="NAV3"
/gene_synonym="KIAA0938"
/gene_synonym="POMFIL1"
/db_xref="GeneID:89795"
CDS 551..>2600
/gene="NAV3"
/gene_synonym="KIAA0938"
/gene_synonym="POMFIL1"
/codon_start=1
/product="NAV3 protein"
/protein_id="AAH17667.1"
/db_xref="GeneID:89795"
/translation="MPVLGVASKLRQPAVGSKPVHTALPIPNLGTTGSQHCSSRPLEL
AETESSMLSCQLALKSTCEFGEKKPLQGKAKEKEDSKIYTDWANHYLAKSGHKRLIKD
LQQDIADGVLLAEIIQIIANEKVEDINGCPRSQSQMIENVDVCLSFLAARGVNVQGLS
AEEIRNGNLKAILGLFFSLSRYKQQQHHQQQYYQSLVELQQRVTHASPPSEASQAKTQ
QDMQSSLAARYATQSNHSGIATSQKKPTRLPGPSRVPAAGSSSKVQGASNLNRRSQSF
NSIDKNKPPNYANGNEKDSSKGPQSSSGVNGNVQPPSTAGQPPASAIPSPSASKPWRS
KSMNVKHSATSTMLTVKQSSTATSPTPSSDRLKPPVSEGVKTAPSGQKSMLEKFKLVN
ARTALRPPQPPSSGPSDGGKDDDAFSESGEMEGFNSGLNSGGSTNSSPKVSPKLAPPK
AGSKNLSNKKSLLQPKEKEEKNRDKNKVCTEKPVKEEKDQVTEMAPKKTSKIASLIPK
GSKTTAAKKESLIPSSSGIPKPGSKVPTVKQTISPGSTASKESEKFRTTKGSPSQSLS
KPITMEKASASSCPAPLEGREAGQASPSGSCTMTVAQSSGQSTGNGAVQLPQQQQHSH
PNTATVAPFIYRAHSENEGTALPSADSCTSPTKMDLSYSKTAKQCLEEISGEDPEKKK
K"
misc_feature 791..1096
/gene="NAV3"
/gene_synonym="KIAA0938"
/gene_synonym="POMFIL1"
/note="CH; Region: Calponin homology (CH) domain. The CH
domain is found in both cytoskeletal proteins and signal
transduction proteins. The CH domain is involved in actin
binding in some members of the family. However in
calponins there is evidence that the CH domain is not
involved in its actin binding activity. Most proteins have
two copies of the CH domain, however some proteins such as
calponin have only a single copy"
/db_xref="CDD:pfam00307"
BASE COUNT 845 a 592 c 580 g 583 t
ORIGIN
1 gaacccctgt ccttccactg ttgtggtctt ttggctgctc tgacatttgg actgaagggc
61 ttttcctttt gattttttcc tctttttcac tctcaaagtt cagactcaga ctgctttagt
121 gagaaaaaaa aaataagcaa aactaagagc tctttaatcc taagaaggag ctttgtagca
181 gttaccttga agaagagttt actccccaaa ggagtattta gtattactta gatactgagt
241 cactgaacag agagagagag agagacagag agagagagag acagagagag agagagagag
301 agagagaaag agagagagag agagaatgag aatgaatatg aatcccagcc agcaagaaag
361 aaaagatact taactaaaga tgcagggaag ttttgcctct tcctgaaaat tatattatca
421 gctttttaaa aatcaggatg actgctagtt ttgtttaaag tatttgttct ggaaatacta
481 aagttggagt ctaccagact gaggttagaa gcattttctt tggcagcaag aagataattt
541 tatagaagcc atgcctgttc ttggggttgc ctcaaaactg aggcagccag ctgttgggtc
601 aaagcctgtg catactgctc ttccgatacc aaatcttggc actactgggt cacagcactg
661 ttcttcaaga cctttggaac ttgctgaaac agagagctcc atgctttctt gtcagcttgc
721 gttaaaatca acctgtgaat ttggagagaa gaaacccctc caaggaaaag ccaaggagaa
781 agaagacagc aagatttaca ctgactgggc caaccactac ctagcaaaat caggccacaa
841 gcggctgatc aaggacttgc aacaagacat tgcagatgga gtactcctag cagaaatcat
901 ccagattatt gcaaatgaaa aagttgaaga tatcaatgga tgtcctagaa gtcagtctca
961 gatgattgaa aatgttgatg tctgccttag ttttctagca gccagagggg taaatgttca
1021 aggtctatct gctgaagaaa taagaaatgg aaacttaaaa gccattctag ggctgttttt
1081 cagtttatct cgctacaagc agcaacaaca ccatcaacaa cagtactatc agtccttggt
1141 ggaacttcag cagcgagtta ctcacgcttc ccctccatcg gaagccagcc aggccaaaac
1201 ccagcaagat atgcagtcca gtctggcagc cagatatgca actcagtcta atcacagtgg
1261 aattgcaacc agtcaaaaaa agcctactag gcttccaggg ccctctaggg tgcctgctgc
1321 aggaagcagc agcaaggtcc agggagcctc taatttaaat aggagaagtc agagctttaa
1381 cagcattgac aaaaacaagc ctccaaatta tgcaaatgga aacgaaaaag attcctccaa
1441 aggacctcaa tcgtcttcag gtgtaaatgg taacgtgcag cctcccagta ctgctgggca
1501 gcctcctgcc tctgccatcc cttctccaag tgccagcaag ccctggcgca gcaagtccat
1561 gaatgtcaaa cacagtgcca cctccaccat gttgactgta aagcagtcaa gtacagccac
1621 ctcccccaca ccatcttcag acagactgaa gccacctgtc tcagaagggg tcaaaactgc
1681 tccctcagga cagaaatcca tgcttgagaa attcaagcta gtcaatgccc ggactgcttt
1741 acgccccccg cagcctccca gttcaggacc tagtgatggt gggaaggatg atgatgcctt
1801 ttctgaatct ggtgaaatgg aaggttttaa cagtggtctg aatagtggtg gctcaacaaa
1861 tagcagtccc aaagtgtcac ctaagttggc ccctccaaaa gctggaagca aaaatctcag
1921 caataaaaag tctttgctac agccaaagga aaaagaagaa aagaacaggg acaaaaataa
1981 agtttgcact gaaaaaccag tcaaagaaga gaaggatcag gtgacagaga tggctccaaa
2041 aaagacctcc aaaattgcaa gcttgatccc taagggcagc aagacaacag cagctaagaa
2101 ggaaagctta attccgtctt ccagtggtat tccaaaacca ggctctaaag ttccaacagt
2161 aaagcaaacc atttcacctg gcagcacagc aagcaaagag tctgagaaat tcaggactac
2221 caaggggagc ccttcccagt ccttatctaa gcctataacc atggagaaag caagtgcttc
2281 tagttgtcct gcccctttgg aaggaaggga agctggccaa gcttctcctt ctggttcctg
2341 taccatgaca gtggcacaaa gcagtgggca gagcacagga aatggtgctg tccaactccc
2401 tcaacagcag caacatagcc acccgaatac cgcgacagtg gcaccattca tttacagggc
2461 acattcagaa aatgaaggta ccgctttacc atcggctgac tcctgtacca gtcctacaaa
2521 gatggactta tcatatagta agactgctaa gcagtgcctg gaggagatat ctggtgaaga
2581 ccctgaaaaa aaaaaaaaaa
//