LOCUS BC017588 1438 bp mRNA linear HUM 27-JUL-2005
DEFINITION Homo sapiens chemokine (C-X-C motif) ligand 16, mRNA (cDNA clone
MGC:26644 IMAGE:4837010), complete cds.
ACCESSION BC017588
VERSION BC017588.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1438)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1438)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 34 Row: l Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11545764.
FEATURES Location/Qualifiers
source 1..1438
/db_xref="H-InvDB:HIT000038064"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26644 IMAGE:4837010"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1438
/gene="CXCL16"
/gene_synonym="CXCLG16"
/gene_synonym="SR-PSOX"
/gene_synonym="SRPSOX"
/db_xref="GeneID:58191"
/db_xref="MIM:605398"
CDS 527..1348
/gene="CXCL16"
/gene_synonym="CXCLG16"
/gene_synonym="SR-PSOX"
/gene_synonym="SRPSOX"
/codon_start=1
/product="CXCL16 protein"
/protein_id="AAH17588.1"
/db_xref="GeneID:58191"
/db_xref="MIM:605398"
/translation="MSGSQSEVAPSPQSPRSPEMGRDLRPGSRVLLLLLLLLLVYLTQ
PGNGNEGSVTGSCYCGKRISSDSPPSVQFMNRLRKHLRAYHRCLYYTRFQLLSWSVCG
GNKDPWVQELMSCLDLKECGHAYSGIVAHQKHLLPTSPPISQASEGASSDIHTPAQML
LSTLQSTQRPTLPVGSLSSDKELTRPNETTIHTAGHSLAAGPEAGENQKQPEKNAGPT
ARTSATVPVLCLLAIIFILTAALSYVLCKRRRGQSPQSSPDLPVHYIPVAPDSNT"
BASE COUNT 273 a 462 c 430 g 273 t
ORIGIN
1 agcgggggtg gctgccccgc aggtgcgcgc ggccggggct ggcggcgact ctctccaccg
61 ggccgcccgg gaggctcatg cagcgcggct gggtcccgcg gcgcccggat cggggaagtg
121 aaagtgcctc ggaggaggag ggccggtccg gcagtgcagc cgcctcacag gtcggcggac
181 gggccaggcg ggcggcctcc tgaaccgaac cgaatcggct cctcgggccg tcgtcctccc
241 gcccctcctc gcccgccgcc ggagttttct ttcggtttct tccaagattc ctggccttcc
301 ctcgacggag ccgggcccag tgcgggggcg cagggcgcgg gagctccacc tcctcggctt
361 tccctgcgtc cagaggctgg catggcgcgg gccgagtact gagcgcacgg tcggggcaca
421 gcagggccgg tgggtgcagc tggctcgcgc ctcctctccg gccgccgtct cctccggtcc
481 ccggcgaaag ccattgagac accagctgga cgtcacgcgc cggagcatgt ctgggagtca
541 gagcgaggtg gctccatccc cgcagagtcc gcggagcccc gagatgggac gggacttgcg
601 gcccgggtcc cgcgtgctcc tgctcctgct tctgctcctg ctggtgtacc tgactcagcc
661 aggcaatggc aacgagggca gcgtcactgg aagttgttat tgtggtaaaa gaatttcttc
721 cgactccccg ccatcggttc agttcatgaa tcgtctccgg aaacacctga gagcttacca
781 tcggtgtcta tactacacga ggttccagct cctttcctgg agcgtgtgtg gaggcaacaa
841 ggacccatgg gttcaggaat tgatgagctg tcttgatctc aaagaatgtg gacatgctta
901 ctcggggatt gtggcccacc agaagcattt acttcctacc agccccccaa tttctcaggc
961 ctcagagggg gcatcttcag atatccacac ccctgcccag atgctcctgt ccaccttgca
1021 gtccactcag cgccccaccc tcccagtagg atcactgtcc tcggacaaag agctcactcg
1081 tcccaatgaa accaccattc acactgcggg ccacagtctg gcagctgggc ctgaggctgg
1141 ggagaaccag aagcagccgg aaaaaaatgc tggtcccaca gccaggacat cagccacagt
1201 gccggtcctg tgcctcctgg ccatcatctt catcctcacc gcagcccttt cctatgtgct
1261 gtgcaagagg aggagggggc agtcaccgca gtcctctcca gatctgccgg ttcattatat
1321 acctgtggca cctgactcta atacctgagc caagaatgga agcttgtgag ggtaaactgt
1381 ggcttattct tacaaaaagt gtaataaagg agactgaccc ctgaaaaaaa aaaaaaaa
//