LOCUS BC017576 1217 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromosome 1 open reading frame 84, mRNA (cDNA clone
IMAGE:4092807), complete cds.
ACCESSION BC017576
VERSION BC017576.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1217)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1217)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 32 Row: i Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 61676275
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1217
/db_xref="H-InvDB:HIT000089335"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4092807"
/tissue_type="Bladder, carcinoma"
/clone_lib="NIH_MGC_53"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1217
/gene="C1orf84"
/gene_synonym="FLJ34502"
/gene_synonym="RP11-506B15.1"
/db_xref="GeneID:149469"
/db_xref="HGNC:HGNC:27144"
CDS 89..625
/gene="C1orf84"
/gene_synonym="FLJ34502"
/gene_synonym="RP11-506B15.1"
/codon_start=1
/product="chromosome 1 open reading frame 84"
/protein_id="AAH17576.1"
/db_xref="GeneID:149469"
/db_xref="HGNC:HGNC:27144"
/translation="MASERPEPEVEEAGQVFLLMKKDYRISRNVRLAWFLSHLHQTVQ
ATPQEMLSEQELEVLSVLPPGWQPDEPVVPRPFLLVPSTRVTFLAWQYRFVIELDLSP
STGIVDDSTGEILFDEVFHALSRCLGGLLRPFRVPGSCIDFQPEIYVTIQAYSSIIGL
QSHQRQGFTMLARLPSNF"
BASE COUNT 304 a 280 c 323 g 310 t
ORIGIN
1 ggggtcctgc tgggtgccga ggtagccagg tcaggggtca agagtggaac accctcactg
61 gcccgggccg gcgcgggagg gctgtgtgat ggcctcggag cgcccggagc cggaggtgga
121 agaagctggg caggtgttcc tgttaatgaa aaaggattat cgaatctccc gaaatgttcg
181 cctggcttgg ttcctcagtc atctgcacca aactgtgcag gccacacccc aggagatgct
241 gtctgaacag gaattggaag tcctcagtgt cctgccccct gggtggcagc cagatgaacc
301 agtggtccca aggccattcc tcctggtacc ttccacccgg gtcaccttcc tggcttggca
361 gtatcggttt gtcattgagt tggaccttag cccatctact ggcattgtgg atgattccac
421 aggggagatc ttgtttgatg aagttttcca tgccctgtcc cgctgcttag gcgggctgct
481 tcggcccttc cgagtgcctg gatcttgcat cgacttccag cctgagatct atgtaactat
541 ccaggcctac tcctccatca ttggactgca gtcccaccag agacagggtt tcaccatgtt
601 ggccaggctg ccctcgaact tctgacctca agtgatccac ctgcctcagc ctcccaaagt
661 gctgggatta caggcatgag ctactgtgcc tggcccaaag cagcatttga actgagtttt
721 gaagaaagaa ttgaggttaa ccattcaaag aaggggaaat ggacttttct gacagaggga
781 ccagcaaaag caaatacatg gtactatgaa cctgtactct caatcacagg tgttttaggg
841 aactacatat tattcagtgt caacagagta aaatttgaat gtggaaaggg atggtaaaga
901 ggagactgta gacataagtg ggagctggtt atgaaaggcc atgaatgtga cactaaggac
961 tttgtgcttt attctatggg ggagttcagt gtggaggata agagcactgg atctggaatc
1021 acattgcctg tgtttgcttc ctggcagtac cacttactgg ttgtgtgtcc ttgagcaagt
1081 tacttaacct ttctgtgcat ctgtgacctt tttccaaagg ggatattaac attgcttata
1141 tcatatggtg attgaattaa tacatgtcaa gcacttagaa ctgtgcttgc caaaaaaaaa
1201 aaaaaaaaaa aaaaaaa
//