LOCUS BC017476 2907 bp mRNA linear HUM 14-SEP-2006
DEFINITION Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane
domain (TM) and short cytoplasmic domain, (semaphorin) 4C, mRNA
(cDNA clone IMAGE:3528227), partial cds.
ACCESSION BC017476
VERSION BC017476.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2907)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2907)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 23 Row: g Column: 8.
FEATURES Location/Qualifiers
source 1..2907
/db_xref="H-InvDB:HIT000038025"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3528227"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2907
/gene="SEMA4C"
/gene_synonym="FLJ20369"
/gene_synonym="KIAA1739"
/gene_synonym="M-Sema F"
/gene_synonym="M-SEMA-F"
/gene_synonym="Semacl1"
/gene_synonym="Semaf"
/db_xref="GeneID:54910"
/db_xref="HGNC:HGNC:10731"
/db_xref="MIM:604462"
CDS <1..1938
/gene="SEMA4C"
/gene_synonym="FLJ20369"
/gene_synonym="KIAA1739"
/gene_synonym="M-Sema F"
/gene_synonym="M-SEMA-F"
/gene_synonym="Semacl1"
/gene_synonym="Semaf"
/codon_start=1
/product="SEMA4C protein"
/protein_id="AAH17476.2"
/db_xref="GeneID:54910"
/db_xref="HGNC:HGNC:10731"
/db_xref="MIM:604462"
/translation="PIILRNMGPHHSMKTEYLAFWLNEPHFVGSAYVPESVGSFTGDD
DKVYFFFRERAVESDCYAEQVVARVARVCKGDMGGARTLQRKWTTFLKARLACSAPNW
QLYFNQLQAMHTLQDTSWHNTTFFGVFQAQWGDMYLSAICEYQLEEIQRVFEGPYKEY
HEEAQKWDRYTDPVPSPRPGSCINNWHRRHGYTSSLELPDNILNFVKKHPLMEEQVGP
RWSRPLLVKKGTNFTHLVADRVTGLDGATYTVLFIGTGDGWLLKAVSLGPWVHLIEEL
QLFDQEPMRSLVLSQSKKLLFAGSRSQLVQLPVADCMKYRSCADCVLARDPYCAWSVN
TSRCVAVGGHSGSLLIQHVMTSDTSGICNLRGSKKVRPTPKNITVVAGTDLVLPCHLS
SNLAHARWTFGGRDLPAEQPGSFLYDARLQALVVMAAQPRHAGAYHCFSEEQGARLAA
EGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEK
GAKATERTLVYPLELPKEPTSPPFRPCPEPDEKLWDPVGYYYSDGSLKIVPGHARCQP
GGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGLGHPLPELADE
LRRKLQQRQPLPDSNPEESSV"
BASE COUNT 596 a 819 c 889 g 603 t
ORIGIN
1 cccattatcc tgcgtaacat ggggccccac cactccatga agacagagta cctggccttt
61 tggctcaacg aacctcactt tgtaggctct gcctatgtac ctgagagtgt gggcagcttc
121 acgggggacg acgacaaggt ctacttcttc ttcagggagc gggcagtgga gtccgactgc
181 tatgccgagc aggtggtggc tcgtgtggcc cgtgtctgca agggcgatat ggggggcgca
241 cggaccctgc agaggaagtg gaccacgttc ctgaaggcgc ggctggcatg ctctgccccg
301 aactggcagc tctacttcaa ccagctgcag gcgatgcaca ccctgcagga cacctcctgg
361 cacaacacca ccttctttgg ggtttttcaa gcacagtggg gtgacatgta cctgtcggcc
421 atctgtgagt accagttgga agagatccag cgggtgtttg agggccccta taaggagtac
481 catgaggaag cccagaagtg ggaccgctac actgaccctg tacccagccc tcggcctggc
541 tcgtgcatta acaactggca tcggcgccac ggctacacca gctccctgga gctacccgac
601 aacatcctca acttcgtcaa gaagcacccg ctgatggagg agcaggtggg gcctcggtgg
661 agccgccccc tgctcgtgaa gaagggcacc aacttcaccc acctggtggc cgaccgggtt
721 acaggacttg atggagccac ctatacagtg ctgttcattg gcacaggaga cggctggctg
781 ctcaaggctg tgagcctggg gccctgggtt cacctgattg aggagctgca gctgtttgac
841 caggagccca tgagaagcct ggtgctatct cagagcaaga agctgctctt tgccggctcc
901 cgctctcagc tggtgcagct gcccgtggcc gactgcatga agtatcgctc ctgtgcagac
961 tgtgtcctcg cccgggaccc ctattgcgcc tggagcgtca acaccagccg ctgtgtggcc
1021 gtgggtggcc actctggatc tctactgatc cagcatgtga tgacctcgga cacttcaggc
1081 atctgcaacc tccgtggcag taagaaagtc aggcccactc ccaaaaacat cacggtggtg
1141 gcgggcacag acctggtgct gccctgccac ctctcctcca acttggccca tgcccgctgg
1201 acctttgggg gccgggacct gcctgcggaa cagcccgggt ccttcctcta cgatgcccgg
1261 ctccaggccc tggttgtgat ggctgcccag ccccgccatg ccggggccta ccactgcttt
1321 tcagaggagc agggggcgcg gctggctgct gaaggctacc ttgtggctgt cgtggcaggc
1381 ccatcggtga ccttggaggc ccgggccccc ctggaaaacc tggggctggt gtggctggcg
1441 gtggtggccc tgggggctgt gtgcctggtg ctgctgctgc tggtgctgtc attgcgccgg
1501 cggctgcggg aagagctgga gaaaggggcc aaggctactg agaggacctt ggtgtacccc
1561 ctggagctgc ccaaggagcc caccagtccc cccttccggc cctgtcctga accagatgag
1621 aaactttggg atcctgtcgg ttactactat tcagatggct cccttaagat agtacctggg
1681 catgcccggt gccagcccgg tggggggccc ccttcgccac ctccaggcat cccaggccag
1741 cctctgcctt ctccaactcg gcttcacctg gggggtgggc ggaactcaaa tgccaatggt
1801 tacgtgcgct tacaactagg aggggaggac cggggagggc tcgggcaccc cctgcctgag
1861 ctcgcggatg aactgagacg caaactgcag caacgccagc cactgcccga ctccaacccc
1921 gaggagtcat cagtatgagg ggaaccccca ccgcgtcggc gggaagcgtg ggaggtgtag
1981 ctcctacttt tgcacaggca ccagctacct cagggacatg gcacgggcac ctgctctgtc
2041 tgggacagat actgcccagc acccacccgg ccatgaggac ctgctctgct cagcacgggc
2101 actgccactt ggtgtggctc accagggcac cagcctcgca gaaggcatct tcctcctctc
2161 tgtgaatcac agacacgcgg gaccccagcc gccaaaactt ttcaaggcag aagtttcaag
2221 atgtgtgttt gtctgtattt gcacatgtgt ttgtgtgtgt gtgtatgtgt gtgtgcacgc
2281 gcgtgcgcgc ttgtggcata gccttcctgt ttctgtcaag tcttcccttg gcctgggtcc
2341 tcctggtgag tcattggagc tatgaagggg aaggggtcgt atcactttgt ctctcctacc
2401 cccactgccc cgagtgtcgg gcagcgatgt acatatggag gtggggtgga cagggtgctg
2461 tgccccttca gagggagtgc agggcttggg gtgggcctag tcctgctcct agggctgtga
2521 atgttttcag ggtgggggga gggagatgga gcctcctgtg tgtttggggg gaagggtggg
2581 tggggcctcc cacttggccc cggggttcag tggtatttta tacttgcctt cttcctgtac
2641 agggctggga aaggctgtgt gaggggagag aagggagagg gtgggcctgc tgtggacaat
2701 ggcatactct cttccagccc taggaggagg gctcctaaca gtgtaactta ttgtgtcccc
2761 gcgtatttat ttgttgtaaa tatttgagta tttttatatt gacaaataaa atggagaaaa
2821 tgaaacgaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2881 aaaaaaaaaa aaaaaaaaaa aaaaaaa
//