LOCUS BC017318 937 bp mRNA linear HUM 06-MAR-2007
DEFINITION Homo sapiens LY6/PLAUR domain containing 1, mRNA (cDNA clone
MGC:29643 IMAGE:3641660), complete cds.
ACCESSION BC017318
VERSION BC017318.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 937)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 937)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC017318.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: b Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40255056.
FEATURES Location/Qualifiers
source 1..937
/db_xref="H-InvDB:HIT000037943"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29643 IMAGE:3641660"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..937
/gene="LYPD1"
/gene_synonym="PHTS"
/db_xref="GeneID:116372"
/db_xref="HGNC:HGNC:28431"
/db_xref="MIM:610450"
CDS 252..677
/gene="LYPD1"
/gene_synonym="PHTS"
/codon_start=1
/product="LY6/PLAUR domain containing 1"
/protein_id="AAH17318.1"
/db_xref="GeneID:116372"
/db_xref="HGNC:HGNC:28431"
/db_xref="MIM:610450"
/translation="MWVLGIAATFCGLFLLPGFALQIQCYQCEEFQLNNDCSSPEFIV
NCTVNVQDMCQKEVMEQSAGIMYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCN
TPLCNGPRPKKRGSSASALRPGLRTTILFLKLALFSAHC"
BASE COUNT 195 a 290 c 256 g 196 t
ORIGIN
1 ccggaggcgc ggtgctcggc ccgggagcgc gagcgggagg agcagagacc cgcagccggg
61 agcccgagcg cgggcgatgc aggctccgcg agcggcacct gcggctcctc taagctacga
121 ccgtcgtctc cgcggcagca gcgcgggccc cagcagcctc ggcagccaca gccgctgcag
181 ccggggcagc ctccgctgct gtcgcctcct ctgatgcgct tgccctctcc cggccccggg
241 actccgggag aatgtgggtc ctaggcatcg cggcaacttt ttgcggattg ttcttgcttc
301 caggctttgc gctgcaaatc cagtgctacc agtgtgaaga attccagctg aacaacgact
361 gctcctcccc cgagttcatt gtgaattgca cggtgaacgt tcaagacatg tgtcagaaag
421 aagtgatgga gcaaagtgcc gggatcatgt accgcaagtc ctgtgcatca tcagcggcct
481 gtctcatcgc ctctgccggg taccagtcct tctgctcccc agggaaactg aactcagttt
541 gcatcagctg ctgcaacacc cctctttgta acgggccaag gcccaagaaa aggggaagtt
601 ctgcctcggc cctcaggcca gggctccgca ccaccatcct gttcctcaaa ttagccctct
661 tctcggcaca ctgctgaagc tgaaggagat gccaccccct cctgcattgt tcttccagcc
721 ctcgccccca accccccacc tccctgagtg agtttcttct gggtgtcctt ttattctggg
781 tagggagcgg gagtccgtgt tctcttttgt tcctgtgcaa ataatgaaag agctcggtaa
841 agcattctga ataaattcag cctgactgaa ttttcagtat gtacttgaag gaaggaggtg
901 gagtgaaagt tcacccccaa aaaaaaaaaa aaaaaaa
//