LOCUS BC017276 3100 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens vascular cell adhesion molecule 1, mRNA (cDNA clone
MGC:29563 IMAGE:4845424), complete cds.
ACCESSION BC017276
VERSION BC017276.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3100)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3100)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC017276.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: g Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18201907.
FEATURES Location/Qualifiers
source 1..3100
/db_xref="H-InvDB:HIT000037916"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29563 IMAGE:4845424"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3100
/gene="VCAM1"
/gene_synonym="CD106"
/gene_synonym="INCAM-100"
/db_xref="GeneID:7412"
/db_xref="HGNC:HGNC:12663"
/db_xref="MIM:192225"
CDS 102..2321
/gene="VCAM1"
/gene_synonym="CD106"
/gene_synonym="INCAM-100"
/codon_start=1
/product="vascular cell adhesion molecule 1"
/protein_id="AAH17276.3"
/db_xref="GeneID:7412"
/db_xref="HGNC:HGNC:12663"
/db_xref="MIM:192225"
/translation="MPGKMVVILGASNILWIMFAASQAFKIETTPESRYLAQIGDSVS
LTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR
KLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK
SQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQ
VYISPKNTVISVNPSTKLQEGGSVTMTCSSEGLPAPEIFWSKKLDNGNLQHLSGNATL
TLIAMRMEDSGIYVCEGVNLIGKNRKEVELIVQEKPFTVEISPGPRIAAQIGDSVMLT
CSVMGCESPSFSWRTQIDSPLSGKVRSEGTNSTLTLSPVSFENEHSYLCTVTCGHKKL
EKGIQVELYSFPRDPEIEMSGGLVNGSSVTVSCKVPSVYPLDRLEIELLKGETILENI
EFLEDTDMKSLENKSLEMTFIPTIEDTGKALVCQAKLHIDDMEFEPKQRQSTQTLYVN
VAPRDTTVLVSPSSILEEGSSVNMTCLSQGFPAPKILWSRQLPNGELQPLSENATLTL
ISTKMEDSGVYLCEGINQAGRSRKEVELIIQVTPKDIKLTAFPSESVKEGDTVIISCT
CGNVPETWIILKKKAETGDTVLKSIDGAYTIRKAQLKDAGVYECESKNKVGSQLRSLT
LDVQGRENNKDYFSPELLVLYFASSLIIPAIGMIIYFARKANMKGSYSLVEAQKSKV"
BASE COUNT 956 a 591 c 684 g 869 t
ORIGIN
1 ctcactggct tcaggagctg aataccctcc caggcacaca caggtgggac acaaataagg
61 gttttggaac cactattttc tcatcacgac agcaacttaa aatgcctggg aagatggtcg
121 tgatccttgg agcctcaaat atactttgga taatgtttgc agcttctcaa gcttttaaaa
181 tcgagaccac cccagaatct agatatcttg ctcagattgg tgactccgtc tcattgactt
241 gcagcaccac aggctgtgag tccccatttt tctcttggag aacccagata gatagtccac
301 tgaatgggaa ggtgacgaat gaggggacca catctacgct gacaatgaat cctgttagtt
361 ttgggaacga acactcttac ctgtgcacag caacttgtga atctaggaaa ttggaaaaag
421 gaatccaggt ggagatctac tcttttccta aggatccaga gattcatttg agtggccctc
481 tggaggctgg gaagccgatc acagtcaagt gttcagttgc tgatgtatac ccatttgaca
541 ggctggagat agacttactg aaaggagatc atctcatgaa gagtcaggaa tttctggagg
601 atgcagacag gaagtccctg gaaaccaaga gtttggaagt aacctttact cctgtcattg
661 aggatattgg aaaagttctt gtttgccgag ctaaattaca cattgatgaa atggattctg
721 tgcccacagt aaggcaggct gtaaaagaat tgcaagtcta catatcaccc aagaatacag
781 ttatttctgt gaatccatcc acaaagctgc aagaaggtgg ctctgtgacc atgacctgtt
841 ccagcgaggg tctaccagct ccagagattt tctggagtaa gaaattagat aatgggaatc
901 tacagcacct ttctggaaat gcaactctca ccttaattgc tatgaggatg gaagattctg
961 gaatttatgt gtgtgaagga gttaatttga ttgggaaaaa cagaaaagag gtggaattaa
1021 ttgttcaaga gaaaccattt actgttgaga tctcccctgg accccggatt gctgctcaga
1081 ttggagactc agtcatgttg acatgtagtg tcatgggctg tgaatcccca tctttctcct
1141 ggagaaccca gatagacagc cctctgagcg ggaaggtgag gagtgagggg accaattcca
1201 cgctgaccct gagccctgtg agttttgaga acgaacactc ttatctgtgc acagtgactt
1261 gtggacataa gaaactggaa aagggaatcc aggtggagct ctactcattc cctagagatc
1321 cagaaatcga gatgagtggt ggcctcgtga atgggagctc tgtcactgta agctgcaagg
1381 ttcctagcgt gtaccccctt gaccggctgg agattgaatt acttaagggg gagactattc
1441 tggagaatat agagtttttg gaggatacgg atatgaaatc tctagagaac aaaagtttgg
1501 aaatgacctt catccctacc attgaagata ctggaaaagc tcttgtttgt caggctaagt
1561 tacatattga tgacatggaa ttcgaaccca aacaaaggca gagtacgcaa acactttatg
1621 tcaatgttgc ccccagagat acaaccgtct tggtcagccc ttcctccatc ctggaggaag
1681 gcagttctgt gaatatgaca tgcttgagcc agggctttcc tgctccgaaa atcctgtgga
1741 gcaggcagct ccctaacggg gagctacagc ctctttctga gaatgcaact ctcaccttaa
1801 tttctacaaa aatggaagat tctggggttt atttatgtga aggaattaac caggctggaa
1861 gaagcagaaa ggaagtggaa ttaattatcc aagttactcc aaaagacata aaacttacag
1921 cttttccttc tgagagtgtc aaagaaggag acactgtcat catctcttgt acatgtggaa
1981 atgttccaga aacatggata atcctgaaga aaaaagcgga gacaggagac acagtactaa
2041 aatctataga tggcgcctat accatccgaa aggcccagtt gaaggatgcg ggagtatatg
2101 aatgtgaatc taaaaacaaa gttggctcac aattaagaag tttaacactt gatgttcaag
2161 gaagagaaaa caacaaagac tatttttctc ctgagcttct cgtgctctat tttgcatcct
2221 ccttaataat acctgccatt ggaatgataa tttactttgc aagaaaagcc aacatgaagg
2281 ggtcatatag tcttgtagaa gcacagaaat caaaagtgta gctaatgctt gatatgttca
2341 actggagaca ctatttatct gtgcaaatcc ttgatactgc tcatcattcc ttgagaaaaa
2401 caatgagctg agaggcagac ttccctgaat gtattgaact tggaaagaaa tgcccatcta
2461 tgtcccttgc tgtgagcaag aagtcaaagt aaaacttgct gcctgaagaa cagtaactgc
2521 catcaagatg agagaactgg aggagttcct tgatctgtat atacaataac ataatttgta
2581 catatgtaaa ataaaattat gccatagcaa gattgcttaa aatagcaaca ctctatattt
2641 agattgttaa aataactagt gttgcttgga ctattataat ttaatgcatg ttaggaaaat
2701 ttcacattaa tatttgctga cagctgacct ttgtcatctt tcttctattt tattcccttt
2761 cacaaaattt tattcctata tagtttattg acaataattt caggttttgt aaagatgccg
2821 ggttttatat ttttatagac aaataataag caaagggagc actgggttga ctttcaggta
2881 ctaaatacct caacctatgg tataatggtt gactgggttt ctctgtatag tactggcatg
2941 gtacggagat gtttcacgaa gtttgttcat cagactcctg tgcaactttc ccaatgtggc
3001 ctaaaaatgc aacttctttt tattttcttt tgtaaatgtt taggtttttt tgtatagtaa
3061 agtgataatt tctggaatta gaaaaaaaaa aaaaaaaaaa
//