LOCUS BC017202 1816 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens isovaleryl Coenzyme A dehydrogenase, mRNA (cDNA clone
MGC:3496 IMAGE:3627787), complete cds.
ACCESSION BC017202
VERSION BC017202.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1816)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1816)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 31, 2003 this sequence version replaced BC017202.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 12 Row: o Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6031167.
FEATURES Location/Qualifiers
source 1..1816
/db_xref="H-InvDB:HIT000037872"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3496 IMAGE:3627787"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1816
/gene="IVD"
/gene_synonym="ACAD2"
/db_xref="GeneID:3712"
/db_xref="HGNC:HGNC:6186"
/db_xref="MIM:607036"
CDS 12..1283
/gene="IVD"
/gene_synonym="ACAD2"
/codon_start=1
/product="isovaleryl Coenzyme A dehydrogenase"
/protein_id="AAH17202.1"
/db_xref="GeneID:3712"
/db_xref="HGNC:HGNC:6186"
/db_xref="MIM:607036"
/translation="MATATRLLGCRVASWRLRPPLAGFVSQRAHSLLPVDDAINGLSE
EQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSG
LGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIG
ALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPA
SRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVL
MSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLM
ACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGR
FLRDAKLYEIGAGTSEVRRLVIGRAFNADFH"
BASE COUNT 398 a 479 c 533 g 406 t
ORIGIN
1 gcatggcaga gatggcgact gcgactcggc tgctggggtg tcgtgtggcg agctggaggc
61 tgcggccgcc gcttgccggc ttcgtttccc agcgggccca ctcgcttttg cccgtggacg
121 atgcaatcaa tgggctaagc gaggagcaga ggcagcttcg tcagaccatg gctaagttcc
181 ttcaggagca cctggccccc aaggcccagg agatcgatcg cagcaatgag ttcaagaacc
241 tgcgagaatt ttggaagcag ctggggaacc tgggcgtatt gggcatcaca gcccctgttc
301 agtatggcgg ctccggcctg ggctacctgg agcatgtgct ggtgatggag gagatatccc
361 gagcttccgg agcagtgggg ctcagttacg gtgcccactc caacctctgc atcaaccagc
421 ttgtacgcaa tgggaatgag gcccagaaag agaagtatct cccgaagctg atcagtggtg
481 agtacatcgg agccctggcc atgagtgagc ccaatgcagg ctctgatgtt gtctctatga
541 agctcaaagc ggaaaagaaa ggaaatcact acatcctgaa tggcaacaag ttctggatca
601 ctaatggccc tgatgctgac gtcctgattg tctatgccaa gacagatctg gctgctgtgc
661 cagcttctcg gggcatcaca gccttcattg tggagaaggg tatgcctggc tttagcacct
721 ctaagaagct ggacaagctg gggatgaggg gctctaacac ctgtgagcta atctttgaag
781 actgcaagat tcctgctgcc aacatcctgg gccatgagaa taagggtgtc tacgtgctga
841 tgagtgggct ggacctggag cggctggtgc tggccggggg gcctcttggg ctcatgcaag
901 cggtcctgga ccacaccatt ccctacctgc acgtgaggga agcctttggc cagaagatcg
961 gccacttcca gttgatgcag gggaagatgg ctgacatgta cacccgcctc atggcgtgtc
1021 ggcagtatgt ctacaatgtc gccaaggcct gcgatgaggg ccattgcact gctaaggact
1081 gtgcaggtgt gattctttac tcagctgagt gtgccacaca ggtagccctg gacggcattc
1141 agtgttttgg tggcaatggc tacatcaatg actttcccat gggccgcttt cttcgagatg
1201 ccaagctgta tgagataggg gctgggacca gcgaggtgag gcggctggtc atcggcagag
1261 ccttcaatgc agactttcac tagtcctgag acccttcgcc cccttttcct gcacctagtg
1321 gcctttcttg ggaagtagag atgtggcggc tttcccaccc tgcccacagc aggccctcct
1381 gcccagctgc tcttgtcagc cctctggcct ctggatgagg ttgagttctc cacaacagct
1441 cccaagcatc atgggcctcg cagccgggcc tgtgccacgg ctagtgttgt gtgatttaaa
1501 atggactcag caggaagcat attgtctggg gattgttggg acaagttttg gtgactctgt
1561 gcccttgctc tctaacttct gagcccacct cccagggtag gcacctgggg gcatgcaggt
1621 gcccacctcc cagggtaggc acctgggggc atgcaggtac ccacctcttt ctcttgggtg
1681 aggctctggc aaggagatct ctctgctcaa gcacagcaga atcatggccc ctctccatga
1741 attggaactt ggtacaggtt aagtatccct aatcctgaaa tctgaaaaaa aaaaaaaaaa
1801 aaaaaaaaaa aaaaaa
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