LOCUS BC017167 2675 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens nucleoporin 107kDa, mRNA (cDNA clone MGC:9311
IMAGE:3909848), complete cds.
ACCESSION BC017167
VERSION BC017167.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2675)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2675)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC017167.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: f Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56788371.
FEATURES Location/Qualifiers
source 1..2675
/db_xref="H-InvDB:HIT000050671"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9311 IMAGE:3909848"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2675
/gene="NUP107"
/gene_synonym="NUP84"
/db_xref="GeneID:57122"
/db_xref="HGNC:HGNC:29914"
/db_xref="MIM:607617"
CDS 369..2429
/gene="NUP107"
/gene_synonym="NUP84"
/codon_start=1
/product="NUP107 protein"
/protein_id="AAH17167.1"
/db_xref="GeneID:57122"
/db_xref="HGNC:HGNC:29914"
/db_xref="MIM:607617"
/translation="MSMFSDFLQSFLKHSSSTVFDLVEEYENICGSQVNILSKIVSRA
TPGLQKFSKTASMLWLLQQEMVTWRLLASLYRDRIQSALEEESVFAVTAVNASEKTVV
EALFQRDSLVRQSQLVVDWLESIAKDEIGEFSDNIEFYAKSVYWENTLHTLKQRQLTS
YVGSVRPLVTELDPDAPIRQKMPLDDLDREDEVRLLKYLFTLIRAGMTEEAQRLCKRC
GQAWRAATLEGWKLYHDPNVNGGTELEPVEGNPYRRIWKISCWRMAEDELFNRYERAI
YAALSGNLKQLLPVCDTWEDTVWAYFRVMVDSLVEQEIQTSVATLDETEELPREYLGA
NWTLEKVFEELQATDKKRVLEENQEHYHIVQKFLILGDIDGLMDEFSKWLSKSRNNLP
GHLLRFMTHLILFFRTLGLQTKEEVSIEVLKTYIQEDRLKIDVIDWLVFDPAQRAEAL
KQGNAIMRKFLASKKHEAAKEVFVKIPQDSIAEIYNQCEEQGMESPLPAEDDNAIREH
LCIRAYLEAHETFNEWFKHMNSVPQKPALIPQPTFTEKVAHEHKEKKYEMDFGIWKGH
LDALTADVKEKMYNVLLFVDGGWMVDVREDAKEDHERTHQMVLLRKLCLPMLCFLLHT
ILHSTGQYQECLQLADMVSSERHKLYLVFSKEELRKLLQKLRESSLMLLDQGLDPLGY
EIQL"
BASE COUNT 851 a 464 c 603 g 757 t
ORIGIN
1 gctaaaacgc ggtagctaaa ctgcagccaa ctttggttgt gtgtggaaaa ggctttagcc
61 atggacagga gtggctttgg agagatatca tcccctgtaa tccgggaggc agaggtgaca
121 cggactgcac gaaaacagag tgctcagaaa agagttttac ttcaggcatc tcaagatgaa
181 aattttggta atactacacc aagaaaccag gttatccctc gaactcctag ctcatttcga
241 cagcctttta ccccaacaag ccgaagctta ctaaggcagc cagatatttc ctgcattctt
301 ggaacaggag ggaagtcgcc ccgacttacg cagtcttcag ggttctttgg aaatctctcc
361 atgcatccat gagtatgttt tctgatttcc tgcagtcttt tctgaagcac tcttcgagta
421 cagtttttga tcttgtggaa gagtatgaaa acatctgtgg tagtcaggtg aatatactga
481 gtaaaatagt gagtcgagca acacctggac ttcaaaaatt ttcaaaaaca gccagtatgc
541 tctggcttct tcaacaggag atggtcacat ggaggctgct ggcttctttg tatagagaca
601 gaatacagtc tgcattagaa gaggaaagtg tattcgcagt tactgctgtt aatgccagtg
661 aaaaaacagt tgtggaagcg ttatttcaga gggattcact tgttcgacaa agtcagctgg
721 tggtagattg gttagagagt attgccaaag atgaaattgg agaattttct gataatattg
781 agttttatgc aaaatcagta tattgggaaa atactctgca taccttaaaa caacggcagc
841 tgacttctta cgttggaagt gttcgtccgc ttgtcactga attggaccct gatgctccca
901 taagacagaa aatgcccctt gatgatctgg atagagaaga tgaagttaga ttactcaaat
961 atctctttac tctaatccgt gctggaatga cagaagaggc acaacgactc tgtaaacgct
1021 gtggtcaagc atggagagct gcaacacttg aaggctggaa actgtaccat gaccctaatg
1081 ttaatggagg aacagaatta gaacctgttg aagggaatcc atatagacgc atttggaaaa
1141 taagttgctg gagaatggca gaagatgagc tttttaatag atacgagaga gcaatttatg
1201 cagctttaag tgggaatctt aagcagctgc ttcctgtctg tgacacctgg gaagacacag
1261 tttgggccta cttccgggtg atggtggaca gtctggtaga acaagagatc cagacatcag
1321 tagcaactct ggatgaaact gaagaactcc ctagagaata tctgggagca aactggacgt
1381 tagaaaaggt ttttgaggaa cttcaagcta ctgacaaaaa gagagttctg gaagagaatc
1441 aagaacatta tcatatagtt caaaagtttc ttatcctggg agacattgat ggtttgatgg
1501 atgagtttag caaatggctt tccaaaagca gaaacaatct acctggacac ctgcttcgct
1561 ttatgactca ccttattttg tttttccgta ctctgggact acagaccaag gaggaagttt
1621 ctattgaagt tttaaagaca tacatacagg aggatcgttt aaaaattgat gtaattgact
1681 ggttggtatt tgacccagcg cagagggcag aagcactgaa acaaggcaat gcaattatga
1741 gaaaattctt ggcatcaaaa aagcacgaag ctgcaaaaga agtatttgtg aaaattcctc
1801 aggattctat agcagaaatc tataatcagt gcgaggaaca aggaatggaa agtccacttc
1861 ctgctgaaga tgataatgct atccgagaac atttgtgcat cagagcttat ttggaagccc
1921 atgaaacctt taatgagtgg tttaagcata tgaattcagt tccacaaaaa cctgctttga
1981 tacctcaacc aacttttact gagaaagtgg ctcatgaaca caaagaaaag aaatatgaaa
2041 tggattttgg tatttggaaa gggcatttgg atgccctaac tgctgatgtg aaggagaaaa
2101 tgtataacgt cttgttgttt gttgatggag ggtggatggt ggatgttaga gaggatgcca
2161 aagaagacca tgaaagaaca catcaaatgg tcttactgag aaagctttgt ctgccaatgt
2221 tgtgttttct gcttcatacg atattgcaca gtactggtca gtatcaggaa tgcctacagt
2281 tagcagatat ggtatcctct gagcgccaca aactgtacct ggtattttct aaggaagagc
2341 taaggaagtt gctgcagaag ctcagagagt cctctctaat gctcctagac cagggacttg
2401 acccattagg gtatgaaatt cagttatagt ttaatctttg taatctcact aattttcatg
2461 ataaatgaag tttttaataa aatatacttg ttattagtaa ttttttcttt tgcattacca
2521 tgtaaaattt agacatttga attttgtact tttcagaata ttatcgtgac actttcaaca
2581 tgtagggata tcagcgtttc tctgtgtgct tgttaataaa actatataaa aattaaaatt
2641 ttctgttttt acaaaaaaaa aaaaaaaaaa aaaaa
//