LOCUS BC016873 2139 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens SEC16 homolog A (S. cerevisiae), mRNA (cDNA clone
IMAGE:3884106), partial cds.
ACCESSION BC016873
VERSION BC016873.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2139)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2139)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 22 Row: b Column: 20.
FEATURES Location/Qualifiers
source 1..2139
/db_xref="H-InvDB:HIT000089095"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3884106"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_68"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2139
/gene="SEC16A"
/gene_synonym="p250"
/gene_synonym="RP11-413M3.10"
/gene_synonym="SEC16L"
/db_xref="GeneID:9919"
/db_xref="HGNC:HGNC:29006"
CDS <1..476
/gene="SEC16A"
/gene_synonym="p250"
/gene_synonym="RP11-413M3.10"
/gene_synonym="SEC16L"
/codon_start=3
/product="SEC16A protein"
/protein_id="AAH16873.1"
/db_xref="GeneID:9919"
/db_xref="HGNC:HGNC:29006"
/translation="GTQRSEPALAPADFVAPLAPLPIPSNLFVPTPDAEEPQLPDGTG
REGPAAARGLANPEPAPEPKVLSSAASLPGSELPSSRPEGSQGGELSRCSSMSSLSRE
VSQHFNQAPGDLPAAGGPPSGAMPFYNPAQLAQACATSGSSRLGRIGQRKHLVLN"
BASE COUNT 465 a 571 c 548 g 555 t
ORIGIN
1 gcgggaccca gcggagcgag ccggctctcg ctcctgcgga ctttgtcgct ccactcgcgc
61 cactcccaat tccttctaac ttgttcgtgc caaccccaga tgcagaagaa ccacagcttc
121 cagacgggac tggcagggaa gggcctgcag cagctagggg cctggccaat ccagagcctg
181 ccccagagcc caaggtttta agctctgcag cgtcactccc tggctctgaa ctcccctcct
241 ccaggcctga gggttcccag ggaggagagc tttcgcgctg tagttcaatg agttcattat
301 cacgtgaagt gagccagcat tttaatcagg ctcctggcga cctccctgct gcagggggcc
361 ctcccagcgg ggccatgccc ttctacaacc ctgctcagct ggcacaggcc tgcgccacct
421 ccgggagctc aaggctaggg aggattggcc agaggaagca cctggtgctg aactaggctt
481 gccctgctgt gaacttgcac ttggagccct gacgctgctg ttctccccga agaacccgac
541 cgacctccgc gatctccgtc ccgcccccag ggagacacag cagtgactca gagctggtcg
601 cacactgtgc ctccctcctc accgcccatc gtaatgaatt attttgaaaa ttaattccac
661 catcctttca gattctggat ggaaagactg aatctttgac tcagaattgt ttgccgaaaa
721 gaatgatgtg actttcttag tcatttagga tgatttaagg atatagtatt cctggtcatt
781 taagaatgtt cattcattga ggccggagct gtctctgcca caggagagcc acatggtcgg
841 tagtaaccag ggcctctcca agcccagctg tgagtcactg cccagtgagt cccgcgcttc
901 ctttaaggtg ctgggagcaa agagagggtg actgaggcag accccaaccc ctgctctgca
961 ccatctgggc cctcgccgtg tttgaacctg gctgaatgag tggagggcgc tgtgttctca
1021 atcagcgcct ccgaggagcc gtggggttcc ttcggcatta gttcacggtt tttgagagag
1081 gccctagtta ctgcagtgaa tttctttcct gttgcaaaga cgcttccggc ctcactttac
1141 tttctgtggc ctgatgagga ccatgggtga ttttgtgtac ccaaagcgct ggggactgcc
1201 caccgtgtgg cccagtcact gggaaggagc cccagagagc cggctgtctg acatgatggc
1261 tcagggtggt catccaggtt gaaaactgac cgtgtgatgt ttgatttggg cttcatttcg
1321 tgtgtaggag cacggttaga ctcactgtta aggaagctgg atgcacttct ctaaaaggct
1381 gcactttccg tgagcacttt tcgtggtaca atccacatga cccactttct cccctggggg
1441 acgttggttc agaggttggt agcacttggg gagagtatct taacacagtt tcttgacagc
1501 agctctggaa cttagtattt ctgccccgag ttttgccaca ctgagacttt gagtagctcc
1561 tggtggactc aaccctgttc aactcagaga cgggcctcct ctcactgatg caaagcttta
1621 aggcttctct gactgttctg aaactcttcg tattcttgtc aagtctaaag agactgaaga
1681 aaagatttaa atactaataa aaatcagtag ataatttctg taggttctgc tggaggaata
1741 caaactgttt ggtgttttaa atttaagtgt agaaattgta gaatgtggaa ttagcacaga
1801 tccttcctgg ctttctgttt cacttgatca tttagcccag accacccagg atgttttcca
1861 aaatgttcca caggcgtgtc ccgctggatc catttgtcct tgtcacttgg agaaaggcca
1921 gtccctgtga cggggcagcc ctctctgtcc ctcggtcagc tcgtgtgaat cctgggacct
1981 cttccggtcg gctctgcccg ctgttctggg gtcgactgcc acgacttttg attcaagaag
2041 cttcctccag gcgggagcgg ctatttttcc taaatgagaa ttgttacatt gcaaattgtt
2101 gaataaaata ttttgcgctc cttcaaaaaa aaaaaaaaa
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