LOCUS BC016765 1200 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens PDZ and LIM domain 4, mRNA (cDNA clone MGC:22663
IMAGE:4132234), complete cds.
ACCESSION BC016765
VERSION BC016765.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1200)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1200)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 32 Row: a Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923180.
FEATURES Location/Qualifiers
source 1..1200
/db_xref="H-InvDB:HIT000037678"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22663 IMAGE:4132234"
/tissue_type="Bone marrow, chronic myelogenous leukemia"
/clone_lib="NIH_MGC_54"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1200
/gene="PDLIM4"
/gene_synonym="RIL"
/db_xref="GeneID:8572"
/db_xref="HGNC:HGNC:16501"
/db_xref="MIM:603422"
CDS 80..1072
/gene="PDLIM4"
/gene_synonym="RIL"
/codon_start=1
/product="PDZ and LIM domain 4"
/protein_id="AAH16765.1"
/db_xref="GeneID:8572"
/db_xref="HGNC:HGNC:16501"
/db_xref="MIM:603422"
/translation="MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALC
PGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRI
HIDPEIQDGSPTTSRGPSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMS
TLHVSPPPSADPARGLPRSRDCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGML
EAGEGGDWPGPGGPRNLKPTASKLGAPLSGLQGLPECTRCGHGIVGTIVKARDKLYHP
ECFMCSDCGLNLKQRGYFFLDERLYCESHAKARVKPPEGYDVVAVYPNAKVELV"
BASE COUNT 239 a 409 c 371 g 181 t
ORIGIN
1 gggggcggcg tccaggcggc ggcggcggcg gcggctcctc agagtccggc tcaggctccg
61 gctgcggctc cagcccgcga tgccccattc cgtgaccctg cgcgggcctt cgccctgggg
121 cttccgcctg gtgggcggcc gggacttcag cgcgcccctc accatctcac gggtccatgc
181 tggcagcaag gctgcattgg ctgccctgtg cccaggagac ctgatccagg ccatcaatgg
241 tgagagcaca gagctcatga cacacctgga ggcacagaac cgcatcaagg gctgccacga
301 tcacctcaca ctgtctgtga gcaggcctga gggcaggagc tggcccagtg cccctgatga
361 cagcaaggct caggcacaca ggatccacat cgatcctgag atccaggacg gcagcccaac
421 aaccagcagg gggccctcag gcaccgggac tgggccagaa gatggcagac caagcctggg
481 atctccatat ggacaacccc ctcgctttcc agtccctcac aatggcagca gcgaggccac
541 cctgccagcc cagatgagca ccctgcatgt gtctccaccc cccagcgctg acccagccag
601 aggcctcccg cggagccggg actgcagagt cgacctgggc tccgaggtgt acaggatgct
661 gcgggagcca gccgagcccg tggccgcgga gcccaagcag tcaggctcct tccgctactt
721 gcagggcatg ctagaggccg gcgagggcgg ggattggccc gggcctggcg gcccccggaa
781 cctcaagccc acggccagca agctgggcgc tccgctgagc ggcctgcagg ggctgcccga
841 gtgcacgcgc tgcggccacg gcatcgtggg caccatcgtc aaggcacggg acaagctcta
901 ccatcccgag tgcttcatgt gcagtgactg cggcctgaac ctcaagcagc gtggttactt
961 ctttctggac gagcggctct actgtgagag ccacgccaag gcgcgcgtga agccgcccga
1021 gggctacgac gtggtggcgg tgtaccccaa tgccaaggtg gaactcgtct gagctgggac
1081 cctgctccca cgcctgcttc ttaaggtccc tgctcggccg gtgtaaatat gtttcaccct
1141 gtccctctaa taaagctcct ctgctccacc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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