LOCUS BC016724 1937 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens death effector domain containing, mRNA (cDNA clone
MGC:24448 IMAGE:4077893), complete cds.
ACCESSION BC016724
VERSION BC016724.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1937)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1937)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 32 Row: k Column: 2.
FEATURES Location/Qualifiers
source 1..1937
/db_xref="H-InvDB:HIT000037652"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:24448 IMAGE:4077893"
/tissue_type="Bone marrow, acute myelogenous leukemia"
/clone_lib="NIH_MGC_55"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1937
/gene="DEDD"
/gene_synonym="CASP8IP1"
/gene_synonym="DEDD1"
/gene_synonym="DEFT"
/gene_synonym="FLDED1"
/gene_synonym="KE05"
/db_xref="GeneID:9191"
/db_xref="HGNC:HGNC:2755"
/db_xref="MIM:606841"
CDS 137..1093
/gene="DEDD"
/gene_synonym="CASP8IP1"
/gene_synonym="DEDD1"
/gene_synonym="DEFT"
/gene_synonym="FLDED1"
/gene_synonym="KE05"
/codon_start=1
/product="death effector domain containing"
/protein_id="AAH16724.1"
/db_xref="GeneID:9191"
/db_xref="HGNC:HGNC:2755"
/db_xref="MIM:606841"
/translation="MAGLKRRASQVWPEEHGEQEHGLYSLHRMFDIVGTHLTHRDVRV
LSFLFVDVIDDHERGLIRNGRDFLLALERQGRCDESNFRQVLQLLRIITRHDLLPYVT
LKRRRAVCPDLVDKYLEETSIRYVTPRALSDPEPRPPQPSKTVPPHYPVVCCPTSGPQ
MCSKRPARGRATLGSQRKRRKSVTPDPKEKQTCDIRLRVRAEYCQHETALQGNVFSNK
QDPLERQFERFNQANTILKSRDLGSIICDIKFSELTYLDAFWRDYINGSLLEALKGVF
ITDSLKQAVGHEAIKLLVNVDEEDYELGRQKLLRNLMLQALP"
BASE COUNT 489 a 502 c 469 g 477 t
ORIGIN
1 ggggggatgg aacatggcgg cgccgagcct gagccgagag aagagacctg ggaaattaag
61 tttcttgcgg agtacggtgg ggattgcagc tgctgagcag ggattctgga aagcattgcg
121 tacctgagcc cccagcatgg cgggcctaaa gcggcgggca agccaggtgt ggccagaaga
181 gcatggtgag caggaacatg ggctgtacag cctgcaccgc atgtttgaca tcgtgggcac
241 tcatctgaca cacagagatg tgcgcgtgct ttctttcctc tttgttgatg tcattgatga
301 ccacgagcgt ggactcatcc gaaatggacg tgacttctta ttggcactgg agcgccaggg
361 ccgctgtgat gaaagtaact ttcgccaggt gctgcagctg ctgcgcatca tcactcgcca
421 cgacctgctg ccctacgtca ccctcaagag gagacgggct gtgtgccctg atcttgtaga
481 caagtatctg gaggagacat caattcgcta tgtgaccccc agagccctca gtgatccaga
541 accaaggcct ccccagccct ctaaaacagt gcctccccac tatcctgtgg tgtgttgccc
601 cacttcgggt cctcagatgt gtagcaagcg gccagcccga gggagagcca cacttgggag
661 ccagcgaaaa cgccggaagt cagtgacacc agatcccaag gagaagcaga catgtgacat
721 cagactgcgg gttcgggctg aatactgcca gcatgagact gctctgcagg gcaatgtctt
781 ctctaacaag caggacccac ttgagcgcca gtttgagcgc tttaaccagg ccaacaccat
841 cctcaagtcc cgggacctgg gctccatcat ctgtgacatc aagttctctg agctcaccta
901 cctcgatgca ttctggcgtg actacatcaa tggctcttta ttagaggcac ttaaaggtgt
961 cttcatcaca gactccctca agcaagctgt gggccatgaa gccatcaagc tgctggtaaa
1021 tgtagacgag gaggactatg agctgggccg acagaaactc ctgaggaact tgatgctgca
1081 agcattgccc tgacctattc cctcttctca ctttggggac tgttcccatc acccacctct
1141 ggagcttaca ctgttctggg gtttgttctc tacccttcca accaatcaca cccctgcctt
1201 tttttttttt tttttaaaga aaaagacaaa agaaagtgga agtggtattc cccacccctc
1261 cctgcaccca tgtgcctggg cttccccttt atttcccttt tccatttacc ccgtaatgtg
1321 tctctacagc taccttacca ctgagccgta agacaaatgt ataggaagaa gcaaagtcta
1381 cagcacatag tctttgtaag ggattgatgt gaacactttt ttttggatgc actaaggagt
1441 tatcaatact tctggcttta tgagagctct taaattttgt ctaaaaaacc aaagggctgt
1501 gagtaaggga gctatgtgga aagtgggact ctgaagtgta ttttgaaaat taatcgccac
1561 cctcttccaa attatagaat tttttaaaaa caagctgtgg ccctttccac tctctcctgg
1621 cctctggtgc tgctcctctc tgccgccttt cctccattcc atggcttgaa acctctgcct
1681 gatgtggctc cttccttttt cccatttgtc aaaccctctt caaaggagga acagataaga
1741 ctgggtcagc ctagtcatgc ctcccaactg tggtggtata tgtgtacaca catacacagg
1801 gtggatggag aagaggttgc tgattaaaat acactccccc tataaagggg aagggggagt
1861 gtgacacttt ctttccatgt tcaagtgaaa ataaataatg taccccggaa aaaaaaaaaa
1921 aaaaaaaaaa aaaaaaa
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