LOCUS BC016657 2944 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1, mRNA (cDNA clone MGC:8999 IMAGE:3917351), complete cds. ACCESSION BC016657 VERSION BC016657.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2944) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2944) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Sep 16, 2003 this sequence version replaced BC016657.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 26 Row: a Column: 2. FEATURES Location/Qualifiers source 1..2944 /db_xref="H-InvDB:HIT000037618" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:8999 IMAGE:3917351" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_72" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2944 /gene="PLOD1" /gene_synonym="LH" /db_xref="GeneID:5351" /db_xref="HGNC:HGNC:9081" /db_xref="MIM:153454" CDS 18..2201 /gene="PLOD1" /gene_synonym="LH" /codon_start=1 /product="procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1" /protein_id="AAH16657.1" /db_xref="GeneID:5351" /db_xref="HGNC:HGNC:9081" /db_xref="MIM:153454" /translation="MRPLLLLALLGWLLLAEAKGDAKPEDNLLVLTVATKETEGFRRF KRSAQFFNYKIQALGLGEDWNVEKGTSAGGGQKVRLLKKALEKHADKEDLVILFTDSY DVLFASGPRELLKKFRQSRSQVVFSAEELIYPDRRLETKYPVVSDGKRFLGSGGFIGY APNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKREQINITLDHRCRIFQNLDGALDEVV LKFEMGHVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWTFETGCTVCDEGLRS LKGIGDEALPTVLVGVFIEQPTPFVSLFFQRLLRLHYPQKHMRLFIHNHEQHHKAQVE EFLAQHGSEYQSVKLVGPEVRMANADARNMGADLCRQDRSCTYYFSVDADVALTEPNS LRLLIQQNKNVIAPLMTRHGRLWSNFWGALSADGYYARSEDYVDIVQGRRVGVWNVPY ISNIYLIKGSALRGELQSSDLFHHSKLDPDMAFCANIRQQDVFMFLTNRHTLGHLLSL DSYRTTHLHNDLWEVFSNPEDWKEKYIHQNYTKALAGKLVETPCPDVYWFPIFTEVAC DELVEEMEHFGQWSLGNNKDNRIQGGYENVPTIDIHMNQIGFEREWHKFLLEYIAPMT EKLYPGYYTRAQFDLAFVVRYKPDEQPSLMPHHDASTFTINIALNRVGVDYEGGGCRF LRYNCSIRAPRKGWTLMHPGRLTHYHEGLPTTRGTRYIAVSFVDP" BASE COUNT 642 a 875 c 843 g 584 t ORIGIN 1 cggacgcgtg ggcggccatg cggcccctgc tgctactggc cctgctgggc tggctgctgc 61 tggccgaagc gaagggcgac gccaagccgg aggacaacct tttagtcctc acggtggcca 121 ctaaggagac cgagggattc cgtcgcttca agcgctcagc tcagttcttc aactacaaga 181 tccaggcgct tggcctaggg gaggactgga atgtggagaa ggggacgtcg gcaggtggag 241 ggcagaaggt ccggctgctg aagaaagctc tggagaagca cgcagacaag gaggatctgg 301 tcattctctt cacagacagc tatgacgtgc tgtttgcatc ggggccccgg gagctcctga 361 agaagttccg gcagtccagg agccaggtgg tcttctctgc tgaggagctc atctacccag 421 accgcaggct ggagaccaag tatccggtgg tgtccgatgg caagaggttc ctgggctctg 481 gaggcttcat cggttatgcc cccaacctca gcaaactggt ggccgagtgg gagggccagg 541 acagcgacag cgatcagctg ttttacacca agatcttctt ggacccggag aagagggagc 601 agatcaatat caccctggac caccgctgcc gtatcttcca gaacctggat ggagccttgg 661 atgaggtcgt gctcaagttt gaaatgggcc atgtgagagc gaggaacctg gcctatgaca 721 ccctcccggt cctgatccat ggcaacgggc caaccaagct gcagttgaac tacctgggca 781 actacatccc gcgcttctgg accttcgaaa caggctgcac cgtgtgtgac gaaggcttgc 841 gcagcctcaa gggcattggg gatgaagctc tgcccacggt cctggtcggc gtgttcatcg 901 aacagcccac gccgtttgtg tccctgttct tccagcggct cctgcggctc cactaccccc 961 agaaacacat gcgacttttc atccacaacc acgagcagca ccacaaggct caggtggaag 1021 agttcctggc acagcatggc agcgagtacc agtctgtgaa gctggtgggc cctgaggtgc 1081 ggatggcgaa tgcagatgcc aggaacatgg gcgcagacct gtgccggcag gaccgcagct 1141 gcacctacta cttcagcgtg gatgctgacg tggccctgac cgagcccaac agcctgcggc 1201 tgctgatcca acagaacaag aacgtcattg ccccgctgat gacccggcat gggaggctgt 1261 ggtcgaactt ctggggggct ctcagtgcag atggctacta tgcccgttcc gaggactacg 1321 tggacattgt gcaggggcgg cgtgttggtg tctggaatgt gccctatatt tcaaacatct 1381 acttgatcaa gggcagtgcc ctgcggggtg agctgcagtc ctcagatctc ttccaccaca 1441 gcaagctgga ccccgacatg gccttctgtg ccaacatccg gcagcaggat gtgttcatgt 1501 tcctgaccaa ccggcacacc cttggccatc tgctctccct agacagctac cgcaccaccc 1561 acctgcacaa cgacctctgg gaggtgttca gcaaccccga ggactggaag gagaagtaca 1621 tccaccagaa ctacaccaaa gccctggccg ggaagctggt ggagacgccc tgcccggatg 1681 tctattggtt ccccatcttc acggaggtgg cctgtgatga gctggtggag gagatggagc 1741 actttggcca gtggtctctg ggcaacaaca aggacaaccg catccagggt ggctacgaga 1801 acgtgccgac tattgacatc cacatgaacc agatcggctt tgagcgggag tggcacaaat 1861 tcctgctgga gtacattgcg cccatgacgg agaagctcta ccccggctac tacaccaggg 1921 cccagtttga cctggccttt gtcgtccgct acaagcctga tgagcagccc tcactgatgc 1981 cacaccatga tgcctccacc ttcaccatca acatcgccct gaaccgagtc ggggtggatt 2041 acgagggcgg gggctgtcgg ttcctgcgct acaactgttc catccgagcc ccaaggaagg 2101 gctggaccct catgcaccct ggacgactca cgcattacca tgaggggctc cccaccacca 2161 ggggcacccg ctacatcgca gtctccttcg tcgatcccta attggccagg cctgaccctc 2221 ttggaccttt cttctttgcc gacaaccact gcccagcagc ctctgggacc tcggggtccc 2281 agggaaccca gtccagcctc ctggctgttg acttcccatt gctcttggag ccaccaatca 2341 aagagattca aagagattcc tgcaggccag aggcggaaca cacctttatg gctggggctc 2401 tccgtggtgt tctggaccca gcccctggag acaccattca cttttactgc tttgtagtga 2461 ctcgtgctct ccaacctgtc ttcctgaaaa accaaggccc ccttccccca cctcttccat 2521 ggggtgagac ttgagcagaa caggggcttc cccaagttgc ccagaaagac tgtctgggtg 2581 agaagccatg gccagagctt ctcccaggca caggtgttgc accagggact tctgcttcaa 2641 gttttggggt aaagacacct ggatcagact ccaagggctg ccctgagtct gggacttctg 2701 cctccatggc tggtcatgag agcaaaccgt agtcccctgg agacagcgac tccagagaac 2761 ctcttgggag acagaagagg catctgtgca cagctcgatc ttctacttgc ctgtggggag 2821 gggagtgaca ggtccacaca ccacactggg tcaccctgtc ctggatgcct ctgaagagag 2881 ggacagaccg tcagaaactg gagagtttct attaaaggtc atttaaacca aaaaaaaaaa 2941 aaaa //