LOCUS BC016649 3315 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens ephrin-B1, mRNA (cDNA clone MGC:8782 IMAGE:3867060), complete cds. ACCESSION BC016649 VERSION BC016649.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3315) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3315) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 13 Row: f Column: 12 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31317225. FEATURES Location/Qualifiers source 1..3315 /db_xref="H-InvDB:HIT000037613" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:8782 IMAGE:3867060" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3315 /gene="EFNB1" /gene_synonym="CFND" /gene_synonym="EFL3" /gene_synonym="Elk-L" /gene_synonym="LERK2" /gene_synonym="MGC8782" /db_xref="GeneID:1947" /db_xref="HGNC:HGNC:3226" /db_xref="MIM:300035" CDS 781..1821 /gene="EFNB1" /gene_synonym="CFND" /gene_synonym="EFL3" /gene_synonym="Elk-L" /gene_synonym="LERK2" /gene_synonym="MGC8782" /codon_start=1 /product="ephrin-B1" /protein_id="AAH16649.1" /db_xref="GeneID:1947" /db_xref="HGNC:HGNC:3226" /db_xref="MIM:300035" /translation="MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKF LSGKGLVIYPKIGDKLDIICPRAEAGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCN RPEQEIRFTIKFQEFSPNYMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKI IMKVGQDPNAVTPEQLTTSRPSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKS GPGASGGSSGDPDGFFNSKVALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQR AAALSLSTLASPKGGSGTAGTEPSDIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEM PPQSPANIYYKV" BASE COUNT 666 a 993 c 1014 g 642 t ORIGIN 1 gcacagcggc agcggaggga gtctatgcga gctggacagc agtgggaggt ttgtgaggct 61 cgcactggcc gcagaccctc gggctcgatc gcccgggagc caggactcgg cgacgcgagg 121 ctgccgggct acccggccga ggcttcgggg gcgcaaacta atgggactgg ctcgctcggc 181 agcatctccc cgctcttcta agtacactga gcagggcccg cgctgaagta gaagctgtcc 241 gggggcgcgt agcccggagt cccagtgtgg cccggaggaa cggagcccgt gccagggcgg 301 cccagtcggg agcccgggga ccgagcttgt gctgtgggga aacccccact tcttccaagg 361 gacagcgatc ccgggacggt cgaggcgtcg gggcggtcac cgagacctct gcgggaagac 421 cccgtcgggg agagggcgcg cagccccgaa gcgtctcggg aagtcgagcg gaatcgggcg 481 ggatcacccg ggggcgcaga gcccccgtcg cgcctcgtgc ggcagcggag agcccaggag 541 aacgagccct cgggggccga agcccatgcc cgggttgggg gcggctgccc agtgagtcct 601 cctggccggc cgggcggaga agagcgacac cgaagccggc gggaggggag cacttcaagg 661 ccggcggctg cggaggatgg gcgcctgagc ggctccgagc gcagcgcggc agaggaaggc 721 gaggcgagct ttggtgagga ggcgccaagg gatcccgaag tgcagtctgc ccccgggaag 781 atggctcggc ctgggcagcg ttggctcggc aagtggcttg tggcgatggt cgtgtgggcg 841 ctgtgccggc tcgccacacc gctggccaag aacctggagc ccgtatcctg gagctccctc 901 aaccccaagt tcctgagtgg gaagggcttg gtgatctatc cgaaaattgg agacaagctg 961 gacatcatct gcccccgagc agaagcaggg cggccctatg agtactacaa gctgtacctg 1021 gtgcggcctg agcaggcagc tgcctgtagc acagttctcg accccaacgt gttggtcacc 1081 tgcaataggc cagagcagga aatacgcttt accatcaagt tccaggagtt cagccccaac 1141 tacatgggcc tggagttcaa gaagcaccat gattactaca ttacctcaac atccaatgga 1201 agcctggagg ggctggaaaa ccgggagggc ggtgtgtgcc gcacacgcac catgaagatc 1261 atcatgaagg ttgggcaaga tcccaatgct gtgacgcctg agcagctgac taccagcagg 1321 cccagcaagg aggcagacaa cactgtcaag atggccacac aggcccctgg tagtcggggc 1381 tccctgggtg actctgatgg caagcatgag actgtgaacc aggaagagaa gagtggccca 1441 ggtgcaagtg ggggcagcag cggggaccct gatggcttct tcaactccaa ggtggcattg 1501 ttcgcggctg tcggtgccgg ttgcgtcatc ttcctgctca tcatcatctt cctgacggtc 1561 ctactactga agctacgcaa gcggcaccgc aagcacacac agcagcgggc ggctgccctc 1621 tcgctcagta ccctggccag tcccaagggg ggcagtggca cagcgggcac cgagcccagc 1681 gacatcatca ttcccttacg gactacagag aacaactact gcccccacta tgagaaggtg 1741 agtggggact acgggcaccc tgtctacatc gtccaagaga tgccgcccca gagcccggcg 1801 aacatctact acaaggtctg agtgcccggc acggcctcag gcccccgagg gacagtcggc 1861 ctggaccgga cctctccttt cgcccccaca ccccctcccc ttgccagctg tgcccacctt 1921 tgtatttagt tttgtagttt cttggctttt ataatccccc tttttccctg ccccctgggc 1981 ttcggagggg ggtgcttgtg cccctaaccc ccatgctctt gtgccttccc cctctggcca 2041 ggcctctggg ctccgtgggg gcgccccttc ttggaaggca gggctggaca ctgatggaca 2101 gcaggcaggg agacagtccc ctggccctgc ccctccctcg ccccccttgc caccttccca 2161 ggactgcttg tccgctatca tcactgtttt taatgctttt gtgttcattt tttagctgtc 2221 aactcatttt catctgtttt ttgaagaaaa atggaaaaat gtaaaaggca gcccctcccc 2281 aggctttgtg agcctggccc aagccagtac aagagggcct ggggcacgat gtggtcagcc 2341 aggaagcata ggatgccatt tcttttatag attccttggt atttctggtg gggtaagggg 2401 caggccaggg ctgttcacgc ccatgaggga agaggaaagt gccactgggc aaggtgtccc 2461 accctcccct cctgaccctc ctacgaggct tatcctggca atggggtagt cactgccacc 2521 cttccacaca cacacacaca cacacacaca cacaaaaatc ccttccttgt gggattcttg 2581 ggcatctcct gcctccctca ctctcacggt aattaatgtc ttaattggct gttgcctggg 2641 gaacaggaga gctgctgcag gcagatgacc tcatgggggg tggagggagg tgaggtgccc 2701 aggtggctat ttgccctgca gagctgggag tttcaccccc accccccacc ctgttctctc 2761 cttacctttg gcatcctttg gcctggtggg gaaacagagg cccagggtgg agacctaagc 2821 gggtataaga ccaggtggcc tgctcctttt ctgggcccta gcacaggtgg gtaaccccca 2881 cccaacccag ctcctgctgc tgtcccagtc ttgggctggg gcctggaaag aggaagaggc 2941 tgcctggggc tgggccagcc cgctgtgcac tttgacccca gttccttgcc agcacggctg 3001 ctaacagact gccacttgag tgcgccttgc aggcactccc agagcagcca tggaaggagc 3061 tggccctcac accatccacc tccacactgc ctcctggcca gctgcccacc ccagtgccag 3121 gtgggagagg gagcagaaca gccagcccct tccaggtggc agtcggaagg gtttttgttt 3181 ttgtttctgt tgccatttgt gtaaatacta gtctttttgg aaaaaaaata atgtaaagat 3241 gttttgtata aactctgaat tattttcttg ttgctttttt cttagaaaaa aatgagaact 3301 aaaaaaaaaa aaaaa //