LOCUS BC016640 1363 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens synovial sarcoma, X breakpoint 5, mRNA (cDNA clone
MGC:9494 IMAGE:3923927), complete cds.
ACCESSION BC016640
VERSION BC016640.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1363)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1363)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC016640.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: e Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28559016.
FEATURES Location/Qualifiers
source 1..1363
/db_xref="H-InvDB:HIT000037608"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9494 IMAGE:3923927"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1363
/gene="SSX5"
/gene_synonym="MGC9494"
/db_xref="GeneID:6758"
/db_xref="HGNC:HGNC:11339"
/db_xref="MIM:300327"
CDS 20..709
/gene="SSX5"
/gene_synonym="MGC9494"
/codon_start=1
/product="synovial sarcoma, X breakpoint 5"
/protein_id="AAH16640.1"
/db_xref="GeneID:6758"
/db_xref="HGNC:HGNC:11339"
/db_xref="MIM:300327"
/translation="MNGDDAFVRRPRVGSQIPQKMQKHPWRQVCDRGIHLVNLSPFWK
VGREPASSIKALLCGRGEARAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTKL
GFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEE
GNDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIY
EEISDPQEDDE"
BASE COUNT 404 a 333 c 313 g 313 t
ORIGIN
1 acagagtgct cccggtgcca tgaacggaga cgatgccttt gtacggagac ctagggttgg
61 ttctcaaata ccacagaaga tgcaaaagca tccctggaga caagtctgtg accgtggaat
121 acatttggtg aatctcagtc cgttctggaa ggtgggaaga gagccagcca gcagcattaa
181 agctctactg tgtggcaggg gagaagctag ggccttcgat gatattgcca aatacttctc
241 tgagaaagag tgggaaaaga tgaaagcctc ggagaaaatc atctatgtgt atatgaagag
301 aaagtatgag gccatgacta aactaggttt caaggccacc ctcccacctt tcatgcgtaa
361 taaacgggtc gcagacttcc aggggaatga ttttgataat gaccctaacc gtgggaatca
421 ggttgaacat cctcagatga ctttcggcag gctccaggga atcttcccga agatcacgcc
481 cgagaagcca gcagaggaag gaaatgattc aaagggagtg ccagaagcat ctggcccaca
541 gaacaatggg aaacagctgc gcccctcagg aaaactaaat acctctgaga aggttaacaa
601 gacatctgga cccaaaaggg ggaaacatgc ctggacccac agagtgcgtg agagaaagca
661 actggtgatt tatgaagaga tcagcgaccc tcaggaagat gacgagtaac tcccctcggg
721 gatatgacac atgcccatga tgagaagcag aacgtggtga cctttcacga acatgggcat
781 ggctgcggat ccctcgtcat caggtgtata gcaagtgaaa gcaagtgttc acaacagtga
841 aaagttgagc gtcatttttc ttagtgtgcc aagagttcga tgttagtgtt tctgttgtat
901 tttgttacag tgtgccattc tgttagatat tagcgttttc actgatgagc aagacatact
961 taatgcatat ttcggtttgt gtatccatgc acctacctca gaaaacaagt atcgtcaggt
1021 attctctgca tagaacaaca ctaccctcct ctcttcccag atgtgaccac tgagggcagt
1081 tctgagtgtt taatttcaga ttttttcctc tgcatttaca caaacacaca cacatgccac
1141 acagacacac atgcgcgcgc gcgcgcgcac acacacacac acacacacac acacacacac
1201 accaagtacc agtataggca tctcccaact gcttttcccc atgtgtcctg gtcaagcccc
1261 cctcactctg tttcctgttc agcatgtact cccctcatcc gattcccctc tatcagtcac
1321 tgccagttaa taaacctttg caaacgttaa aaaaaaaaaa aaa
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