LOCUS BC016480 2902 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens protein phosphatase 1D magnesium-dependent, delta
isoform, mRNA (cDNA clone MGC:17321 IMAGE:3923593), complete cds.
ACCESSION BC016480
VERSION BC016480.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2902)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2902)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: d Column: 8.
FEATURES Location/Qualifiers
source 1..2902
/db_xref="H-InvDB:HIT000037584"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17321 IMAGE:3923593"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2902
/gene="PPM1D"
/gene_synonym="PP2C-DELTA"
/gene_synonym="WIP1"
/db_xref="GeneID:8493"
/db_xref="HGNC:HGNC:9277"
/db_xref="MIM:605100"
CDS 149..1966
/gene="PPM1D"
/gene_synonym="PP2C-DELTA"
/gene_synonym="WIP1"
/codon_start=1
/product="protein phosphatase 1D magnesium-dependent,
delta isoform"
/protein_id="AAH16480.1"
/db_xref="GeneID:8493"
/db_xref="HGNC:HGNC:9277"
/db_xref="MIM:605100"
/translation="MAGLYSLGVSVFSDQGGRKYMEDVTQIVVEPEPTAEEKPSPRRS
LSQPLPPRPSPAALPGGEVSGKGPAVAAREARDPLPDAGASPAPSRCCRRRSSVAFFA
VCDGHGGREAAQFAREHLWGFIKKQKGFTSSEPAKVCAAIRKGFLACHLAMWKKLAEW
PKTMTGLPSTSGTTASVVIIRGMKMYVAHVGDSGVVLGIQDDPKDDFVRAVEVTQDHK
PELPKERERIEGLGGSVMNKSGVNRVVWKRPRLTHNGPVRRSTVIDQIPFLAVARALG
DLWSYDFFSGEFVVSPEPDTSVHTLDPQKHKYIILGSDGLWNMIPPQDAISMCQDQEE
KKYLMGEHGQSCAKMLVNRALGRWRQRMLRADNTSAIVICISPEVDNQGNFTNEDELY
LNLTDSPSYNSQETCVMTPSPCSTPPVKSLEEDPWPRVNSKDHIPALVRSNAFSENFL
EVSAEIARENVQGVVIPSKDPEPLEENCAKALTLRIHDSLNNSLPIGLVPTNSTNTVM
DQKNLKMSTPGQMKAQEIERTPPTNFKRTLEESNSGPLMKKHRRNGLSRSSGAQPASL
PTTSQRKNSVKLTMRRRLRGQKKIGNPLLHQHRKTVCVC"
BASE COUNT 806 a 640 c 678 g 778 t
ORIGIN
1 cgcgcgcccc cccttctccg ggtccgcccc ctcccccttc tcggcgtcgt cgaagataaa
61 caatagttgg ccggcgagcg cctagtgtgt ctcccgccgc cggattcggc gggctgcgtg
121 ggaccggcgg gatcccggcc agccggccat ggcggggctg tactcgctgg gagtgagcgt
181 cttctccgac cagggcggga ggaagtacat ggaggacgtt actcaaatcg ttgtggagcc
241 cgaaccgacg gctgaagaaa agccctcgcc gcggcggtcg ctgtctcagc cgttgcctcc
301 gcggccgtcg ccggccgccc ttcccggcgg cgaagtctcg gggaaaggcc cagcggtggc
361 agcccgagag gctcgcgacc ctctcccgga cgccggggcc tcgccggcac ctagccgctg
421 ctgccgccgc cgttcctccg tggccttttt cgccgtgtgc gacgggcacg gcgggcggga
481 ggcggcacag tttgcccggg agcacttgtg gggtttcatc aagaagcaga agggtttcac
541 ctcgtccgag ccggctaagg tttgcgctgc catccgcaaa ggctttctcg cttgtcacct
601 tgccatgtgg aagaaactgg cggaatggcc aaagactatg acgggtcttc ctagcacatc
661 agggacaact gccagtgtgg tcatcattcg gggcatgaag atgtatgtag ctcacgtagg
721 tgactcaggg gtggttcttg gaattcagga tgacccgaag gatgactttg tcagagctgt
781 ggaggtgaca caggaccata agccagaact tcccaaggaa agagaacgaa tcgaaggact
841 tggtgggagt gtaatgaaca agtctggggt gaatcgtgta gtttggaaac gacctcgact
901 cactcacaat ggacctgtta gaaggagcac agttattgac cagattcctt ttctggcagt
961 agcaagagca cttggtgatt tgtggagcta tgatttcttc agtggtgaat ttgtggtgtc
1021 acctgaacca gacacaagtg tccacactct tgaccctcag aagcacaagt atattatatt
1081 ggggagtgat ggactttgga atatgattcc accacaagat gccatctcaa tgtgccagga
1141 ccaagaggag aaaaaatacc tgatgggtga gcatggacaa tcttgtgcca aaatgcttgt
1201 gaatcgagca ttgggccgct ggaggcagcg tatgctccga gcagataaca ctagtgccat
1261 agtaatctgc atctctccag aagtggacaa tcagggaaac tttaccaatg aagatgagtt
1321 atacctgaac ctgactgaca gcccttccta taatagtcaa gaaacctgtg tgatgactcc
1381 ttccccatgt tctacaccac cagtcaagtc actggaggag gatccatggc caagggtgaa
1441 ttctaaggac catatacctg ccctggttcg tagcaatgcc ttctcagaga attttttaga
1501 ggtttcagct gagatagctc gagagaatgt ccaaggtgta gtcataccct caaaagatcc
1561 agaaccactt gaagaaaatt gcgctaaagc cctgacttta aggatacatg attctttgaa
1621 taatagcctt ccaattggcc ttgtgcctac taattcaaca aacactgtca tggaccaaaa
1681 aaatttgaag atgtcaactc ctggccaaat gaaagcccaa gaaattgaaa gaacccctcc
1741 aacaaacttt aaaaggacat tagaagagtc caattctggc cccctgatga agaagcatag
1801 acgaaatggc ttaagtcgaa gtagtggtgc tcagcctgca agtctcccca caacctcaca
1861 gcgaaagaac tctgttaaac tcaccatgcg acgcagactt aggggccaga agaaaattgg
1921 aaatccttta cttcatcaac acaggaaaac tgtttgtgtt tgctgaaatg catctgggaa
1981 atgaggtttt tccaaactta ggatataaga gggcttttta aatttggtgc cgatgttgaa
2041 ctttttttaa ggggagaaaa ttaaaagaaa tatacagttt gactttttgg aattcagcag
2101 ttttatcctg gccttgtact tgcttgtatt gtaaatgtgg attttgtaga tgttagggta
2161 taagttgctg taaaatttgt gtaaatttgt atccacacaa attcagtctc tgaatacaca
2221 gtattcagag tctctgatac acagtaattg tgacaatagg gctaaatgtt taaagaaatc
2281 aaaagaatct attagatttt agaaaaacat ttaaactttt taaaatactt attaaaaaat
2341 ttgtataagc cacttgtctt gaaaactgtg caacttttta aagtaaatta ttaagcagac
2401 tggaaaagtg atgtattttc atagtgacct gtgtttcact taatgtttct tagagccaag
2461 tgtcttttaa acattatttt ttatttctga tttcataatt cagaactaaa tttttcatag
2521 aagtgttgag ccatgctaca gttagtcttg tcccaattaa aatactatgc agtatctctt
2581 acatcagtag catttttcta aaaccttagt catcagatat gcttactaaa tcttcagcat
2641 agaaggaagt gtgtttgcct aaaacaatct aaaacaattc ccttcttttt catcccagac
2701 caatggcatt attaggtctt aaagtagtta ctcccttctc gtgtttgctt aaaatatgtg
2761 aagttttcct tgctatttca ataacagatg gtgctgctaa ttcccaacat ttcttaaatt
2821 attttatatc atacagtttt cattgattat atgggtatat attcatctaa taaatcagtg
2881 aactgttaaa aaaaaaaaaa aa
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