LOCUS BC016474 2831 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens CCR4-NOT transcription complex, subunit 3, mRNA (cDNA
clone MGC:17152 IMAGE:4181383), complete cds.
ACCESSION BC016474
VERSION BC016474.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2831)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2831)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: k Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42544236.
FEATURES Location/Qualifiers
source 1..2831
/db_xref="H-InvDB:HIT000037580"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17152 IMAGE:4181383"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2831
/gene="CNOT3"
/gene_synonym="KIAA0691"
/gene_synonym="LENG2"
/gene_synonym="NOT3H"
/db_xref="GeneID:4849"
/db_xref="HGNC:HGNC:7879"
/db_xref="MIM:604910"
CDS 278..2539
/gene="CNOT3"
/gene_synonym="KIAA0691"
/gene_synonym="LENG2"
/gene_synonym="NOT3H"
/codon_start=1
/product="CCR4-NOT transcription complex, subunit 3"
/protein_id="AAH16474.1"
/db_xref="GeneID:4849"
/db_xref="HGNC:HGNC:7879"
/db_xref="MIM:604910"
/translation="MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKY
EADLKKEIKKLQRLRDQIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKA
YSKEGLGLAQKVDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDK
DKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPD
FEENEFLYDDLDLEDIPQALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPAN
CTTENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASAL
STTPGNNGVPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPS
VQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSPAEVALSSSGGNNA
SSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPPSSP
TPSFSDAKAAGALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLT
ERDIILSSTSAPPASAQPPLQLSEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHH
MPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTK
AQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGF
TFEYRYLEDRDLQ"
BASE COUNT 665 a 953 c 776 g 437 t
ORIGIN
1 ggaccgggcc cggtcagctt ccgcggagcc attggcagac gccgtggcct cccttgagcc
61 ccgacccccg tcgtcagaac aaccccgggc ccactccccc aaccccactt ccgcttcgcg
121 ccgctatcgc gatagcgccc gggcccgggg cgcgagaaaa aggcggcggg cgctcgcctc
181 ccccgcctgt cgcgatacgc tcctcagcgg cggcgccagc tcctgtgcgt ccgtctccaa
241 gagagtatga agagagtgcg tctgtagggc agggaagatg gcggacaagc gcaaactcca
301 aggtgagatt gatcgctgcc tcaagaaggt gtccgagggc gtggagcagt ttgaagatat
361 ttggcagaag ctccacaatg cagccaacgc gaaccagaaa gaaaagtatg aggctgacct
421 aaagaaggag attaagaagc tacaacggct gagggaccaa atcaagacat gggtagcgtc
481 caacgagatc aaggacaaga ggcagcttat agacaaccgc aagctcattg agacgcaaat
541 ggaacggttc aaagttgtgg aacgagagac caaaaccaaa gcttacagca aagagggcct
601 gggcctggcc cagaaggtag atcctgccca gaaggagaag gaagaggttg gccagtggct
661 cacgaatacc atcgacacgc tcaacatgca ggtggaccag tttgagagtg aagtggagtc
721 actgtcagtg cagacacgca agaagaaggg cgacaaggat aagcaggacc ggattgaggg
781 cttgaagcgg cacatcgaga agcaccgcta ccacgtgcgc atgctagaga ccatcctgcg
841 catgctggac aatgactcca tcctcgttga cgccatccgc aagatcaagg acgacgttga
901 gtactatgtt gactcatccc aggaccccga cttcgaggag aacgagtttc tctacgatga
961 cctggacctc gaggacattc cacaggcgct ggtcgccacc tcccccccca gccacagcca
1021 catggaggat gagatcttca accagtccag cagcacgccc acctcaacca cctccagctc
1081 tcccatcccg cccagcccag ccaactgtac cacggaaaac tctgaagatg ataagaagag
1141 gggacgttcc acagacagtg aagtcagcca gtctccagcc aaaaacggct ccaagcctgt
1201 ccacagcaac cagcaccctc agtccccagc tgtgccgccc acctacccct ccggcccccc
1261 gcctgctgcc tctgccttga gcaccactcc tggcaacaat ggggtccccg cccccgcagc
1321 acccccaagt gccctgggcc ccaaggccag tccagctccc agccacaact cgggcacccc
1381 tgctccctat gcccaggcgg tggccccacc agctcccagt gggcccagca cgacccagcc
1441 ccggcccccc agcgtccagc ctagcggagg cggaggcggc ggcagcggag gcggagggag
1501 cagcagcagt agtaacagca gtgccggtgg aggggctggc aagcagaatg gcgccaccag
1561 ttacagctca gttgtggcag acagcccggc agaggtggct ttgagcagca gtgggggcaa
1621 caatgccagc agccaggcct tgggcccccc ttccggcccc cacaacccac ctcccagcac
1681 ctcgaaggaa cccagtgcgg cagccccaac gggggctggg ggcgtggccc caggctcagg
1741 gaacaactca gggggaccca gcctcctggt gccactgcct gtgaatcctc ccagctcccc
1801 aacgcccagc ttcagtgatg ccaaggcagc cggtgccctg ctcaatgggc ctccacagtt
1861 cagcaccgcc ccagaaatca aggcccctga gcctctgagc tccttgaagt ccatggcgga
1921 acgggcagcc atcagctctg gcattgagga ccctgtgcca acgctgcacc tgaccgagcg
1981 agacatcatc ctgagcagta catcagcacc tccggcctca gcccagccgc ccctgcagct
2041 gtcagaggtg aacataccgc tgtcgctggg tgtctgtcca ctgggccctg tgcccctcac
2101 caaggagcag ctctatcagc aggccatgga agaggccgcc tggcaccaca tgcctcaccc
2161 ctctgactct gagcgtattc ggcagtacct cccccggaac ccctgtccga cgccccccta
2221 ccaccaccag atgccacccc cacactcgga cactgtggaa ttctaccagc gcctgtcgac
2281 cgagacactc ttcttcatct tctactatct ggagggcact aaggcacagt atctggcagc
2341 caaggcccta aagaagcagt catggcgatt ccacaccaag tacatgatgt ggttccagag
2401 gcacgaggag cccaagacca tcactgacga gtttgagcag ggcacctaca tctactttga
2461 ctacgagaag tggggccagc ggaagaagga aggcttcacc tttgagtacc gctacctgga
2521 ggaccgggac ctccagtgac accggcccct ccctctaccc acccccttcc ccttgcatgc
2581 tgatccccct gcccaggtga gggccctgcc ctggaagact ggagggaggc cccaagccac
2641 ggggcatccc cctctcccag gaagcaggga gggggccggg aggttttcct ctcagcccca
2701 ccctgggggc ccgggggcga gggctgcccc ctcctcccct ccccagtgag ggacattttt
2761 tggtaaacct attttcattt tggaaaatat ttatgaataa atagttttat atgaaaaaaa
2821 aaaaaaaaaa a
//