LOCUS BC016465 5100 bp mRNA linear HUM 21-JUL-2006 DEFINITION Homo sapiens tetratricopeptide repeat domain 28, mRNA (cDNA clone MGC:18145 IMAGE:4154050), complete cds. ACCESSION BC016465 VERSION BC016465.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5100) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5100) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 19 Row: n Column: 12. FEATURES Location/Qualifiers source 1..5100 /db_xref="H-InvDB:HIT000037575" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:18145 IMAGE:4154050" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..5100 /gene="TTC28" /gene_synonym="KIAA1043" /db_xref="GeneID:23331" /db_xref="HGNC:HGNC:29179" CDS 368..4132 /gene="TTC28" /gene_synonym="KIAA1043" /codon_start=1 /product="TTC28 protein" /protein_id="AAH16465.1" /db_xref="GeneID:23331" /db_xref="HGNC:HGNC:29179" /translation="MVNGQRGLVLYYSLAAGYLYSWLLAPGAGIVKFHEHYLGENTVE NSSDFQASSSVTLPTATGSALEQHIASVREALGVESHYSRACASSETESEAGDIMDQQ FEEMNNKLNSVTDPTGFLRMVRRNNLFNRSCQSMTSLFSNTVSPTQDGTSSLPRRQSS FAKPPLRALYDLLIAPMEGGLMHSSGPVGRHRQLILVLEGELYLIPFALLKGSSSNEY LYERFGLLAVPSIRSLSVQSKSHLRKNPPTYSSSTSMAAVIGNPKLPSAVMDRWLWGP MPSAEEEAYMVSELLGCQPLVGSVATKERVMSALTQAECVHFATHISWKLSALVLTPS MDGNPASSKSSFGHPYTIPESLRVQDDASDGESISDCPPLQELLLTAADVLDLQLPVK LVVLGSSQESNSKVTADGVIALTRAFLAAGAQCVLVSLWPVPVAASKMFIHAFYSSLL NGLKASAALGEAMKVVQSSKAFSHPSNWAGFMLIGSDVKLNSPSSLIGQALTEILQHP ERARDALRVLLHLVEKSLQRIQNGQRNAMYTSQQSVENKVGGIPGWQALLTAVGFRLD PPTSGLPAAVFFPTSDPGDRLQQCSSTLQSLLGLPNPALQALCKLITASETGEQLISR AVKNMVGMLHQVLVQLQAGEKEQDLASAPIQVSISVQLWRLPGCHEFLAALGFDLCEV GQEEVILKTGKQANRRTVHFALQSLLSLFDSTELPKRLSLDSSSSLESLASAQSVSNA LPLGYQQPPFSPTGADSIASDAISVYSLSSIASSMSFVSKPEGGSEGGGPGGRQDHDR SKNAYLQRSTLPRSQLPPQTRPAGNKDEEEYEGFSIISNEPLATYQENRNTCFSPDHK QPQPGTAGGMRVSVSSKGSISTPNSPVKMTLIPSPNSPFQKVGKLASSDTGESDQSST ETDSTVKSQEESNPKLDPQELAQKILEETQSHLIAVERLQRSGGQVSKSNNPEDGVQA PSSTAVFRASETSAFSRPVLSHQKSQPSPVTVKPKPPARSSSLPKVSSGYSSPTTSEM SIKDSPSQHSGRPSPGCDSQTSQLDQPLFKLKYPSSPYSAHISKSPRNMSPSSGHQSP AGSAPSPALSYSSAGSARSSPADAPDIDKLKMAAIDEKVQAVHNLKMFWQSTPQHSTG PMKIFRGAPGTMTSKRDVLSLLNLSPRHNKKEEGVDKLELKELSLQQHDGAPPKAPPN GHWRTETTSLGSLPLPAGPPATAPARPLRLPSGNGYKFLSPGRFFPSSKC" BASE COUNT 1219 a 1506 c 1273 g 1102 t ORIGIN 1 gttagctgag caactgggcc gaagagaaga tgaggcaaaa attcgccatg gccttggcct 61 ctccctttgg gctagtggaa acttggagga ggcccaacac cagctttata gggcatcagc 121 cttgtttgaa acaatccgac atgaggcaca gctgagcacg gactacaaac tctccctctt 181 tgacctgcag acatcatcct accaggcctt gcagcgggtg ctcgtcagcc taggccatca 241 tgatgaagcc ctggctgtgg cagaaagggg acggacaagg gcatttgctg atcttctggt 301 ggaacgacaa acaggacaac aagactccga cccctactcc ccagtcacta ttgatcagat 361 cttagagatg gtaaatggcc agaggggact agtgctttac tattccctgg ctgcaggcta 421 tctgtatagc tggctgctgg ctcctggggc aggaattgtg aagtttcatg aacactacct 481 gggtgagaac acagtggaaa actcaagtga cttccaggcc agcagcagtg taacccttcc 541 aacagcaacc ggctcagccc tggagcagca cattgccagt gtccgggagg ccctgggggt 601 ggagtctcac tactcaaggg cctgtgccag cagtgagaca gagagtgaag cgggagacat 661 catggaccag caatttgaag agatgaacaa caaactcaac tcggtcactg accccactgg 721 ctttctgcgg atggttcgcc gcaataacct gtttaacagg agctgccaga gcatgacgag 781 cctgttcagt aacactgtgt caccgaccca ggacgggacc tcctctcttc ccaggaggca 841 gagctcgttt gccaagcccc cgctccgtgc cctgtatgac ctgctcatcg cgcccatgga 901 agggggcctg atgcactcca gcggccccgt gggccggcac cggcagctca tcctggttct 961 ggagggggag ctctacctca ttcctttcgc cctcctgaag ggaagctcct ccaatgagta 1021 cctctacgag cgcttcggcc tccttgctgt cccttccatc cgctccctca gcgtgcagtc 1081 caagtctcac ttacggaaga acccgcccac atactccagc tccacatcca tggcggctgt 1141 catcggcaac cccaagctac catcggccgt gatggacagg tggctgtggg ggcccatgcc 1201 atcggccgag gaagaggcct acatggtgtc cgagctgctg ggctgccagc ccctagtggg 1261 cagtgtggcc accaaggaga gggtcatgag tgccctgacc caggctgaat gcgtccactt 1321 tgccacccac atctcctgga agctgtcggc cttggtcctc acgcccagca tggacggcaa 1381 ccctgccagc agcaagagct ccttcggcca cccctacacg atccctgagt ccttgcgggt 1441 gcaggacgat gccagtgatg gggagagcat ctcggactgc ccgcccctgc aggagctgct 1501 gcttactgcc gccgacgtcc tggacctgca gctgcctgtg aagctggtgg tgcttggctc 1561 ctcccaggag tccaacagca aagtcacagc cgacggggtc atcgcgctga caagggcctt 1621 cctggctgcc ggcgctcagt gtgtcctcgt gtctctgtgg cctgtgccag tggctgcttc 1681 taagatgttc atccatgcct tctactcatc cctgctgaac ggcctgaaag ccagcgccgc 1741 cctgggggag gccatgaagg tggtgcagag cagcaaggcc ttctcgcacc cctccaactg 1801 ggcagggttc atgctcatcg ggagtgacgt taagctgaac agcccctcat cactcatcgg 1861 ccaggccctc acagagatcc tgcagcaccc ggagcgtgcg cgggacgccc tgcgagtgct 1921 gctgcacctg gtggagaaat ccctgcagcg catccagaat gggcagcgca atgccatgta 1981 cacatcccag cagagtgtgg agaacaaagt gggcggcatc cctggctggc aggccctcct 2041 caccgctgtg ggcttccggc tggacccccc aaccagtggc ctgccagcgg ctgtcttctt 2101 cccaacctcc gacccgggcg accggctcca gcagtgcagc agcacactcc agtccctgct 2161 gggtctgccc aatcctgccc tccaagccct ttgcaaactc atcactgcct ccgagacggg 2221 cgagcagctc atcagccggg ctgttaaaaa tatggttgga atgctccacc aggtgctggt 2281 tcagctccag gctggcgaga aggagcagga cttggcatca gctcccattc aggtctccat 2341 cagcgtccag ctgtggcggc tcccgggatg ccacgagttc ctggcagctc taggttttga 2401 tctctgtgaa gttggtcagg aggaagtaat cctgaaaacc gggaagcaag ctaatcgacg 2461 gactgtgcac ttcgcgctcc agtccctgct gtctctgttt gattctactg agctacccaa 2521 gcgcctcagc cttgacagct cctcctccct cgagtctctt gcttctgctc agtctgtttc 2581 caacgccctg cccttgggtt accagcaacc ccccttctct cccaccggtg cggacagcat 2641 cgcctcagat gccatctctg tgtacagtct gagctccatt gcctcctcaa tgagctttgt 2701 ctccaaaccc gagggtggat cagagggtgg aggccccgga ggacggcagg accatgaccg 2761 gtccaagaac gcttacctgc agagatccac cctgcctagg agccagctgc ctccccagac 2821 ccgccctgca ggcaacaaag atgaagaaga atatgaaggg ttttctatca tcagtaacga 2881 gcccttggcg acctaccaag aaaaccgaaa cacatgcttc tcaccagacc acaaacaacc 2941 ccaacctggg acagccggag gcatgagagt ctcggtgagc tccaaaggga gcatcagcac 3001 tccaaattct ccagtgaaaa tgactctgat tcccagcccc aactcaccct tccaaaaggt 3061 gggaaaacta gcaagctcag atacaggaga atcagaccag tctagcacag aaacggacag 3121 taccgtgaaa tcccaagaag aaagcaaccc aaaactggat ccacaagagt tagcccagaa 3181 aattctggag gagacacaga gtcatctcat tgcggtggag cgtcttcaga ggagcggcgg 3241 ccaggtgagc aagagtaata accctgaaga cggcgttcag gcgcccagca gcactgctgt 3301 cttcagagcg tcagaaacca gtgcgttcag caggcctgtt ctctcccatc agaagagtca 3361 gccatcacca gtcactgtta aaccaaagcc cccagccagg agctcctccc tgcccaaggt 3421 gagttccgga tatagcagcc ccaccacctc agagatgtcc atcaaagaca gcccgagcca 3481 gcacagtggc cggccatcgc ccggctgcga ctcacagact tcccagctgg accagcctct 3541 ctttaaactg aagtacccca gctctcctta cagcgctcac atttccaaat caccaaggaa 3601 catgtcccca agctccggcc accagtctcc tgctggcagt gcaccctccc cagctctctc 3661 ctactcctca gctggatctg ctcgctcaag tccagcagac gctcccgaca tagacaaact 3721 gaaaatggca gccattgatg aaaaggtgca ggctgtccat aacctgaaga tgttctggca 3781 gagcacaccc cagcattcca cagggccaat gaagatcttc cggggggctc ctggcacgat 3841 gacttccaaa agggatgtcc tcagtctgtt gaatttgtca ccacggcaca ataagaagga 3901 ggagggagtg gataagcttg aactgaagga gctgtccctg cagcagcatg acggagctcc 3961 accgaaagcc cctcccaacg gacactggcg caccgagacc acctcgctgg gctcactgcc 4021 gctgcccgcc ggccctcccg ccacagcccc cgcgcgccct ttgaggcttc cttctggaaa 4081 tggctacaag ttcctgtctc caggaagatt tttcccttct tccaaatgct aaagcatctt 4141 ttatacccac tgactctgag cagcctgcag atgggggcct ggcgtttgct tcagcccttc 4201 cctgagtgca gtccccccac agccaccagc accctcatga tgctgtgctc tgcaggcgag 4261 gggcaccacc acgtccaaag gctgccacac acactggtgg cttttctggg ccacattcac 4321 caaaagccag gacttctgtg gggctggtac aggaggctca tggaatttcc tacacacttc 4381 accaaatgtt tgtttacctt tgaactccct gcttctcatc tttgatatga ttcttcacca 4441 ggattttgta caaaaatgat catggttctg gggtggggag aggaaaggga gcacatattt 4501 tgctaagagg tatatatgca gtacctttta tacacagaaa tacaaataga gctttttcta 4561 aggctttcgg ttgctggttg ggggtgggat atatgaaatt tcagttgaat tctacaggaa 4621 agtgttatat tagccaaaaa cagaaaaatg gtttttaaaa tgccaatgat ttgtaattaa 4681 attgtagcaa ttttggtctc atgatagtgt aatatctcag caacaatgca ataattcaca 4741 ttgaaacagc gcttccattc tgaactctgc tctgcaaatg tcttttgggt cccgctgtca 4801 accaaacttg aattttctta aaaaaaaaat tatgtaactc ttatccaggc attttagaac 4861 tatgcaattg tgatttaaaa tgcaactttg tgcttttaaa acattattga ccttttttgt 4921 atatggataa acaacttggt tttattatca atagtacttt gcatttatag ctattatttt 4981 taaaagctca aaaagttttt taaaatgtca aattttgaat agtcatcaat aagtaattat 5041 caagtttgga aggaaaggtt gaaatgactc cgtttcctta taagcaaaaa aaaaaaaaaa //