LOCUS BC016443 1786 bp mRNA linear HUM 16-DEC-2006
DEFINITION Homo sapiens NLR family, pyrin domain containing 4, mRNA (cDNA
clone IMAGE:3448931), partial cds.
ACCESSION BC016443
VERSION BC016443.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1786)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1786)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 19 Row: e Column: 13.
FEATURES Location/Qualifiers
source 1..1786
/db_xref="H-InvDB:HIT000088995"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3448931"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1786
/gene="NLRP4"
/gene_synonym="CLR19.5"
/gene_synonym="FLJ32126"
/gene_synonym="PAN2"
/gene_synonym="PYPAF4"
/gene_synonym="RNH2"
/db_xref="GeneID:147945"
/db_xref="HGNC:HGNC:22943"
/db_xref="MIM:609645"
CDS <1..1514
/gene="NLRP4"
/gene_synonym="CLR19.5"
/gene_synonym="FLJ32126"
/gene_synonym="PAN2"
/gene_synonym="PYPAF4"
/gene_synonym="RNH2"
/codon_start=3
/product="NLRP4 protein"
/protein_id="AAH16443.1"
/db_xref="GeneID:147945"
/db_xref="HGNC:HGNC:22943"
/db_xref="MIM:609645"
/translation="KILLKYGERESSYVFLHVCIQEFCAALFYLLKSHLDHPHPAVRC
VQELLVANFEKARRAHWIFLGCFLTGLLNKKEQEKLDAFFGFQLSQEIKQQIHQCLKS
LGERGNPQGQVDSLAIFYCLFEMQDPAFVKQAVNLLQEANFHIIDNVDLVVSAYCLKY
CSSLRKLCFSVQNVFKKEDEHSSTSDYSLICWHHICSVLTTSGHLRELQVQDSTLSES
TFVTWCNQLRHPSCRLQKLGINNVSFSGQSVLLFEVLFYQPDLKYLSFTLTKLSRDDI
RSLCDALNYPAGNVKELALAFCHLSEQCCEYISEMLLRNKSVRYLDLSANVLKDEGLK
TLCEALKHPDCCLDSLCLVKCFITAAGCEDLASALISNQNLKILQIGCNEIGDVGVQL
LCRALTHTDCRLEILGLEECGLTSTCCKDLASVLTCSKTLQQLNLTLNTLDHTGVVVL
CEALRHPECALQVLGLRKTDFDEETQALLTAEEERNPNLTITDDCDTITRVEI"
BASE COUNT 454 a 430 c 436 g 466 t
ORIGIN
1 ccaagatact tctgaagtac ggggagcgtg agagctccta cgtgttcctc cacgtgtgta
61 tccaggagtt ctgtgccgcc ttgttctatt tgctcaagag ccaccttgat catcctcacc
121 cagctgtgag atgtgtacag gaattgctag ttgccaattt tgaaaaagca aggagagcac
181 attggatttt tttggggtgt tttctaactg gccttttaaa taaaaaggaa caagaaaaac
241 tggatgcgtt ttttggcttc caactgtccc aagagataaa gcagcaaatt caccagtgcc
301 tgaagagctt aggggagcgt ggcaatcctc agggacaggt ggattccttg gcgatatttt
361 actgtctctt tgaaatgcag gatcctgcct ttgtgaagca ggcagtgaac ctcctccaag
421 aagctaactt tcatattatt gacaacgtgg acttggtggt ttctgcctac tgcttaaaat
481 actgctccag cttgaggaaa ctctgttttt ccgttcaaaa tgtctttaag aaagaggatg
541 aacacagctc tacgtcggat tacagcctca tctgttggca tcacatctgc tctgtgctca
601 ccaccagcgg gcacctcaga gagctccagg tgcaggacag caccctcagc gagtcgacct
661 ttgtgacctg gtgtaaccag ctgaggcatc ccagctgtcg ccttcagaag cttggaataa
721 ataacgtttc cttttctggc cagagtgttc tgctctttga ggtgctcttt tatcagccag
781 acttgaaata cctgagcttc accctcacga aactctctcg tgatgacatc aggtccctct
841 gtgatgcctt gaactaccca gcaggcaacg tcaaagagct agcgttggct ttctgccacc
901 tcagcgagca gtgctgcgaa tacatctctg aaatgcttct gcgtaacaag agcgtgcgct
961 atctagacct cagtgccaat gtcctgaagg acgaaggact gaaaactctc tgcgaggcct
1021 tgaaacatcc ggactgctgc ctggattcac tgtgtttggt aaaatgtttt atcactgctg
1081 ctggctgtga agacctcgcc tctgctctca tcagcaatca aaacctgaag attctgcaaa
1141 ttgggtgcaa tgaaatcgga gatgtgggtg tgcagctgtt gtgtcgggct ctgacgcata
1201 cggattgccg cttagagatt cttgggttgg aagaatgtgg gttaacgagc acctgctgta
1261 aggatctcgc gtctgttctc acctgcagta agaccctgca gcagctcaac ctgaccttga
1321 acaccttgga ccacacaggg gtggttgtac tctgtgaggc cctgagacac ccagagtgtg
1381 ccctgcaggt gctcgggctg agaaaaactg attttgatga ggaaacccag gcacttctga
1441 cggcggagga agagagaaat cctaacctga ccatcacaga tgactgtgac acaatcacaa
1501 gggtagagat ctgattgcga ggaacctggg ctctgactcg aacacctgca aaggacaggg
1561 actgggaccg ttacttacat gacactgcac ccaggagata caaatcattg acactctgag
1621 ttgtgagatt tctggcaccc cattcataga tttgatatga tacacgtggt ttttatgtgc
1681 tctgtggcct tggatgagtc actgaaaggc cttcatggtc tctcggtctc acaaggacct
1741 cttaacccct caataaagtg ttacatttct aaaaaaaaaa aaaaaa
//