LOCUS BC016296 1676 bp mRNA linear HUM 11-SEP-2007 DEFINITION Homo sapiens PRP38 pre-mRNA processing factor 38 (yeast) domain containing B, mRNA (cDNA clone IMAGE:3538108), partial cds. ACCESSION BC016296 VERSION BC016296.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1676) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1676) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (29-OCT-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 8 Row: n Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 8922357. FEATURES Location/Qualifiers source 1..1676 /db_xref="H-InvDB:HIT000088940" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3538108" /tissue_type="Lung, small cell carcinoma" /clone_lib="NIH_MGC_7" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..>1676 /gene="PRPF38B" /gene_synonym="RP11-293A10.1" /db_xref="GeneID:55119" /db_xref="HGNC:HGNC:25512" CDS 253..>1676 /gene="PRPF38B" /gene_synonym="RP11-293A10.1" /codon_start=1 /product="PRPF38B protein" /protein_id="AAH16296.1" /db_xref="GeneID:55119" /db_xref="HGNC:HGNC:25512" /translation="MANNSPALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGKQG NVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKG SRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRAL GFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLF PRIPVPVQKNIDQQIKTRPRKIKKDGKEGAEEIDRHVERRRSRSPRRSLSPRRSPRRS RSRSHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLERRRSRSRE RHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGNEREKERERSRERSKEQ RSRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRS RSKEKSSKHKKKKKKKNQKKKKKK" BASE COUNT 552 a 357 c 472 g 295 t ORIGIN 1 gatcgagctc cctggctgcc ggctcgcctt ctgcgtggag ttctcgcggt ctgggtttcg 61 ctgtctgctc ttggcccggg gtcattttgt cggcgtcggg tgccctctct tgcccagctg 121 gggcacagcg aggcggcccc ttctcccgac gacgttcgat ggagtagggt cccagaccgt 181 tgtcccgaag agcgagatcg agcttggccc cctccccccc ctccttccct ccctccttcc 241 ttccgccgca acatggctaa caacagcccc gcgctgacag gcaactcgca gccgcagcac 301 caggcggctg cagctgcggc tcagcaacag cagcagtgcg gcggcggcgg cgctaccaag 361 ccggcggtct ccggcaagca gggcaatgtg ctcccgctct ggggcaacga gaagaccatg 421 aacctcaacc ccatgatcct gaccaacatc ctgtcgtcgc cttacttcaa agtacagctc 481 tacgagctca agacctacca cgaggtggtg gacgagatct actttaaggt cacgcacgtt 541 gaaccatggg agaaaggaag caggaaaaca gcgggccaga cagggatgtg cggaggggtt 601 cgaggtgttg gaacaggagg aattgtttct acagcatttt gcctgttata caaattattt 661 accctgaagt taactcgaaa gcaagtgatg ggtcttataa cacacacaga ctctccatat 721 attagagcgc ttggatttat gtatataaga tatacacagc cccctacaga tctgtgggac 781 tggtttgaat ccttccttga tgatgaagag gacctagatg tgaaggctgg tggaggctgt 841 gtaatgacca ttggagaaat gctacgatct tttctcacaa aactggagtg gttttctacc 901 ttgtttccaa gaattccagt tccagttcaa aagaatattg atcaacagat taaaacccga 961 cctagaaaaa tcaagaaaga tgggaaggaa ggtgctgagg aaatagacag acatgttgaa 1021 cgcagacgtt caaggtctcc aaggagatct ctgagtccac ggaggtcccc aagaaggtca 1081 agaagtagaa gtcatcatcg ggagggccat gggtcttcta gttttgacag agaattagaa 1141 agagagaaag aacgccagcg actagagcgt gaagccaaag aaagggagaa agaacggcga 1201 agatcccgaa gtattgaccg ggggttagaa cgcaggcgca gcagaagtag ggaaaggcat 1261 agaagtcgca gtcgaagtcg tgataggaaa ggggatagaa gggacaggga tcgagaaaga 1321 gagaaagaaa atgagagagg tagaagacga gatcgtgact atgataagga aagaggaaat 1381 gaacgagaaa aagagagaga gcgatcaaga gaaaggtcca aggaacagag aagtagggga 1441 gaggtagaag agaagaaaca taaagaagac aaagatgata ggcggcacag agatgacaaa 1501 agagattcca agaaagagaa aaaacacagt agaagcagaa gcagagaaag gaaacacaga 1561 agtaggagtc gaagtagaaa tgcagggaaa cgaagtagaa gtagaagcaa agagaaatca 1621 agtaaacata aaaaaaaaaa aaaaaaaaaa aaccaaaaaa aaaaaaaaaa aaaaaa //