LOCUS       BC016296                1676 bp    mRNA    linear   HUM 11-SEP-2007
DEFINITION  Homo sapiens PRP38 pre-mRNA processing factor 38 (yeast) domain
            containing B, mRNA (cDNA clone IMAGE:3538108), partial cds.
ACCESSION   BC016296
VERSION     BC016296.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1676)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1676)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-OCT-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: DCTD/DTP
            cDNA Library Preparation: Rubin Laboratory
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Genome Sequence Centre,
            BC Cancer Agency, Vancouver, BC, Canada
            info@bcgsc.bc.ca
            Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
            Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
            Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
            Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
            Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
            Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
            Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
            Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
            Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAL Plate: 8 Row: n Column: 19
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 8922357.
FEATURES             Location/Qualifiers
     source          1..1676
                     /db_xref="H-InvDB:HIT000088940"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="IMAGE:3538108"
                     /tissue_type="Lung, small cell carcinoma"
                     /clone_lib="NIH_MGC_7"
                     /lab_host="DH10B-R"
                     /note="Vector: pOTB7"
     gene            1..>1676
                     /gene="PRPF38B"
                     /gene_synonym="RP11-293A10.1"
                     /db_xref="GeneID:55119"
                     /db_xref="HGNC:HGNC:25512"
     CDS             253..>1676
                     /gene="PRPF38B"
                     /gene_synonym="RP11-293A10.1"
                     /codon_start=1
                     /product="PRPF38B protein"
                     /protein_id="AAH16296.1"
                     /db_xref="GeneID:55119"
                     /db_xref="HGNC:HGNC:25512"
                     /translation="MANNSPALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGKQG
                     NVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKG
                     SRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRAL
                     GFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLF
                     PRIPVPVQKNIDQQIKTRPRKIKKDGKEGAEEIDRHVERRRSRSPRRSLSPRRSPRRS
                     RSRSHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLERRRSRSRE
                     RHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGNEREKERERSRERSKEQ
                     RSRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRS
                     RSKEKSSKHKKKKKKKNQKKKKKK"
BASE COUNT          552 a          357 c          472 g          295 t
ORIGIN      
        1 gatcgagctc cctggctgcc ggctcgcctt ctgcgtggag ttctcgcggt ctgggtttcg
       61 ctgtctgctc ttggcccggg gtcattttgt cggcgtcggg tgccctctct tgcccagctg
      121 gggcacagcg aggcggcccc ttctcccgac gacgttcgat ggagtagggt cccagaccgt
      181 tgtcccgaag agcgagatcg agcttggccc cctccccccc ctccttccct ccctccttcc
      241 ttccgccgca acatggctaa caacagcccc gcgctgacag gcaactcgca gccgcagcac
      301 caggcggctg cagctgcggc tcagcaacag cagcagtgcg gcggcggcgg cgctaccaag
      361 ccggcggtct ccggcaagca gggcaatgtg ctcccgctct ggggcaacga gaagaccatg
      421 aacctcaacc ccatgatcct gaccaacatc ctgtcgtcgc cttacttcaa agtacagctc
      481 tacgagctca agacctacca cgaggtggtg gacgagatct actttaaggt cacgcacgtt
      541 gaaccatggg agaaaggaag caggaaaaca gcgggccaga cagggatgtg cggaggggtt
      601 cgaggtgttg gaacaggagg aattgtttct acagcatttt gcctgttata caaattattt
      661 accctgaagt taactcgaaa gcaagtgatg ggtcttataa cacacacaga ctctccatat
      721 attagagcgc ttggatttat gtatataaga tatacacagc cccctacaga tctgtgggac
      781 tggtttgaat ccttccttga tgatgaagag gacctagatg tgaaggctgg tggaggctgt
      841 gtaatgacca ttggagaaat gctacgatct tttctcacaa aactggagtg gttttctacc
      901 ttgtttccaa gaattccagt tccagttcaa aagaatattg atcaacagat taaaacccga
      961 cctagaaaaa tcaagaaaga tgggaaggaa ggtgctgagg aaatagacag acatgttgaa
     1021 cgcagacgtt caaggtctcc aaggagatct ctgagtccac ggaggtcccc aagaaggtca
     1081 agaagtagaa gtcatcatcg ggagggccat gggtcttcta gttttgacag agaattagaa
     1141 agagagaaag aacgccagcg actagagcgt gaagccaaag aaagggagaa agaacggcga
     1201 agatcccgaa gtattgaccg ggggttagaa cgcaggcgca gcagaagtag ggaaaggcat
     1261 agaagtcgca gtcgaagtcg tgataggaaa ggggatagaa gggacaggga tcgagaaaga
     1321 gagaaagaaa atgagagagg tagaagacga gatcgtgact atgataagga aagaggaaat
     1381 gaacgagaaa aagagagaga gcgatcaaga gaaaggtcca aggaacagag aagtagggga
     1441 gaggtagaag agaagaaaca taaagaagac aaagatgata ggcggcacag agatgacaaa
     1501 agagattcca agaaagagaa aaaacacagt agaagcagaa gcagagaaag gaaacacaga
     1561 agtaggagtc gaagtagaaa tgcagggaaa cgaagtagaa gtagaagcaa agagaaatca
     1621 agtaaacata aaaaaaaaaa aaaaaaaaaa aaccaaaaaa aaaaaaaaaa aaaaaa
//