LOCUS BC016147 2649 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nuclear receptor subfamily 4, group A, member 1, mRNA
(cDNA clone MGC:9485 IMAGE:3921259), complete cds.
ACCESSION BC016147
VERSION BC016147.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2649)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2649)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: n Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27894343.
FEATURES Location/Qualifiers
source 1..2649
/db_xref="H-InvDB:HIT000037481"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9485 IMAGE:3921259"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2649
/gene="NR4A1"
/gene_synonym="MGC9485"
/gene_synonym="N10"
/gene_synonym="NAK-1"
/gene_synonym="NGFIB"
/gene_synonym="NP10"
/gene_synonym="NUR77"
/gene_synonym="TR3"
/db_xref="GeneID:3164"
/db_xref="HGNC:HGNC:7980"
/db_xref="MIM:139139"
CDS 265..2061
/gene="NR4A1"
/gene_synonym="MGC9485"
/gene_synonym="N10"
/gene_synonym="NAK-1"
/gene_synonym="NGFIB"
/gene_synonym="NP10"
/gene_synonym="NUR77"
/gene_synonym="TR3"
/codon_start=1
/product="nuclear receptor subfamily 4, group A, member 1"
/protein_id="AAH16147.1"
/db_xref="GeneID:3164"
/db_xref="HGNC:HGNC:7980"
/db_xref="MIM:139139"
/translation="MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAP
AAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFK
FEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGH
FSPSQTYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQL
GEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASC
QHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVK
EVVRTDSLKGRRGRLPSKPKQPPDASPANLLTSLVRAHLDSGPSTAKLDYSKFQELVL
PHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILR
LAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPAFACLSA
LVLITDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLC
TQGLQRIFYLKLEDLVPPPPIIDKIFMDTLPF"
BASE COUNT 523 a 879 c 709 g 538 t
ORIGIN
1 ggctacgaaa cttgggggag tgcacagaag aacttcggga gcgcacgcgg gaccagggac
61 caggctgaga ctcggggcgc cagtccgggc aggggcagcg ggagccggcc gggtagggtg
121 cagcctgagg cttgttcagc agaacaggtg caagccacat tgttgccaag acctgcctga
181 agccggattc tccccactgc ctccttcaac cccgcctctt cctcctcctg tgggactgct
241 cccccctcct gtgaggctag atagatgccc tgtatccaag cccaatatgg gacaccagca
301 ccgagtccgg gaccccgtga ccacctggca agcgaccccc tgacccctga gttcatcaag
361 cccaccatgg acctggccag ccccgaggca gcccccgctg cccccactgc cctgcccagc
421 ttcagcacct tcatggacgg ctacacagga gagtttgaca ccttcctcta ccagctgcca
481 ggaacagtcc agccatgctc ctcagcctcc tcctcggcct cctccacatc ctcgtcctca
541 gccacctccc ctgcctctgc ctccttcaag ttcgaggact tccaggtgta cggctgctac
601 cccggccccc tgagcggccc agtggatgag gccctgtcct ccagtggctc tgactactat
661 ggcagcccct gctcggcccc gtcgccctcc acgcccagct tccagccgcc ccagctctct
721 ccctgggatg gctccttcgg ccacttctcg cccagccaga cttacgaagg cctgcgggca
781 tggacagagc agctgcccaa agcctctggg cccccacagc ctccagcctt cttttccttc
841 agtcctccca ccggccccag ccccagcctg gcccagagcc ccctgaagtt gttcccctca
901 caggccaccc accagctggg ggagggagag agctattcca tgcctacggc cttcccaggt
961 ttggcaccca cttctccaca ccttgagggc tcggggatac tggatacacc cgtgacctca
1021 accaaggccc ggagcggggc cccaggtgga agtgaaggcc gctgtgctgt gtgtggggac
1081 aacgcttcat gccagcatta tggtgtccgc acatgtgagg gctgcaaggg cttcttcaag
1141 cgcacagtgc agaaaaacgc caagtacatc tgcctggcta acaaggactg ccctgtggac
1201 aagaggcggc gaaaccgctg ccagttctgc cgcttccaga agtgcctggc ggtgggcatg
1261 gtgaaggaag ttgtccgaac agacagcctg aaggggcggc ggggccggct accttcaaaa
1321 cccaagcagc ccccagatgc ctcccctgcc aatctcctca cttccctggt ccgtgcacac
1381 ctggactcag ggcccagcac tgccaaactg gactactcca agttccagga gctggtgctg
1441 ccccactttg ggaaggaaga tgctggggat gtacagcagt tctacgacct gctctccggt
1501 tctctggagg tcatccgcaa gtgggcggag aagatccctg gctttgctga gctgtcaccg
1561 gctgaccagg acctgttgct ggagtcggcc ttcctggagc tcttcatcct ccgcctggcg
1621 tacaggtcta agccaggcga gggcaagctc atcttctgct caggcctggt gctacaccgg
1681 ctgcagtgtg cccgtggctt cggggactgg attgacagta tcctggcctt ctcaaggtcc
1741 ctgcacagct tgcttgtcga tgtccctgcc ttcgcctgcc tctctgccct tgtcctcatc
1801 accgaccggc atgggctgca ggagccgcgg cgggtggagg agctgcagaa ccgcatcgcc
1861 agctgcctga aggagcacgt ggcagctgtg gcgggcgagc cccagccagc cagctgcctg
1921 tcacgtctgt tgggcaaact gcccgagctg cggaccctgt gcacccaggg cctgcagcgc
1981 atcttctacc tcaagctgga ggacttggtg ccccctccac ccatcattga caagatcttc
2041 atggacacgc tgcccttctg acccctgcct gggaacacgt gtgcacatgc gcactctcat
2101 atgccacccc atgtgccttt agtccacgga cccccagagc acccccaagc ctgggcttga
2161 gctgcagaat gactccacct tctcacctgc tccaggaggt ttgcagggag ctcaagccct
2221 tggggagggg gatgccttca tgggggtgac cccacgattt gtcttatccc ccccagcctg
2281 gccccggcct ttatgttttt tgtaagataa accgttttta acacatagcg ccgtgctgta
2341 aataagccca gtgctgctgt aaatacagga agaaagagct tgaggtggga gcggggctgg
2401 gaggaaggga tgggccccgc cttcctgggc agcctttcca gcctcctgct ggctctctct
2461 tcctaccctc cttccacatg tacataaact gtcactctag gaagaagaca aatgacagat
2521 tctgacattt atatttgtgt attttcctgg atttatagta tgtgactttt ctgattaata
2581 tatttaatat attgaataaa aaatagacat gtagttggaa aaaaaaaaaa atataaaaaa
2641 aaaaaaaaa
//