LOCUS BC016146 2704 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ubiquitin specific peptidase 13 (isopeptidase T-3),
mRNA (cDNA clone MGC:9455 IMAGE:3910925), complete cds.
ACCESSION BC016146
VERSION BC016146.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2704)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2704)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: h Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4507848.
FEATURES Location/Qualifiers
source 1..2704
/db_xref="H-InvDB:HIT000037480"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9455 IMAGE:3910925"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2704
/gene="USP13"
/gene_synonym="IsoT-3"
/gene_synonym="ISOT3"
/db_xref="GeneID:8975"
/db_xref="HGNC:HGNC:12611"
/db_xref="MIM:603591"
CDS 35..2626
/gene="USP13"
/gene_synonym="IsoT-3"
/gene_synonym="ISOT3"
/codon_start=1
/product="ubiquitin specific peptidase 13 (isopeptidase
T-3)"
/protein_id="AAH16146.1"
/db_xref="GeneID:8975"
/db_xref="HGNC:HGNC:12611"
/db_xref="MIM:603591"
/translation="MQRRGALFGMPGGSGGRKMAAGDIGELLVPHMPTIRVPRSGDRV
YKNECAFSYDSPNSEGGLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRG
ASGGALPKRRNSKIFLDLDTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALV
TIACDAVLSSKSPYRKQDPDTWENELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRE
NLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEE
EPVLDPHLAKHLAHFGIDMLHMHGTENGLQDNDIKLRVSEWEVIQESGTKLKPMYGPG
YTGLKNLGNSCYLSSVMQAIFSIPEFQRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGH
GLLSGQYSKPPVKSELIEQVMKEEHKPQQNGISPRMFKAFVSKSHPEFSSNRQQDAQE
FFLHLVNLVERNRIGSENPSDVFRFLVEERIQCCQTRKVRYTERVDYLMQLPVAMEAA
TNKDELIAYELTRREAEANRRPLPELVRAKIPFSACLQAFSEPENVDDFWSSALQAKS
AGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQPGEE
ELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNMG
AEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAIITSMG
FQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENNANANIISEAKPEGPR
VKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDHKVCASERPPKDLGYMY
FYRRIPS"
BASE COUNT 777 a 618 c 682 g 627 t
ORIGIN
1 ctcggctcgc tcggctccgg tgcgcgccga ggccatgcag cgccggggcg ccctgttcgg
61 catgccgggc ggcagcggag gcaggaagat ggctgcagga gacatcggcg agctgctagt
121 gccccacatg cccacgatcc gcgtgcccag gtccggcgac agggtctaca agaacgagtg
181 cgccttctcc tacgactctc ccaattctga aggtggactc tatgtatgca tgaatacatt
241 tttggccttt ggaagggaac atgttgaaag acattttcga aaaactggac agagtgtata
301 catgcacctg aaaagacatg tgcgagagaa ggtaagaggg gcgtctggtg gagcgttacc
361 aaaaaggagg aattccaaga tttttttaga tctagatact gatgacgatt taaatagcga
421 cgattatgaa tatgaagatg aagccaaact tgttatattc ccagatcact atgaaatagc
481 actaccaaat attgaggagt taccagccct ggtaacaatt gcttgtgatg cagttctcag
541 ctcaaaatct ccatacagaa agcaggaccc agacacgtgg gaaaatgaat tgccagtatc
601 taaatatgcc aacaacctca cccagctgga caatggagtc aggattcctc caagtggttg
661 gaagtgtgcc agatgcgacc tgcgagaaaa cctctggttg aatctgactg acggctctgt
721 cctgtgtgga aagtggttct ttgacagctc tgggggcaac gggcatgcgc tggagcatta
781 cagagacatg ggctacccac tagccgtgaa actgggaacc atcactcctg acggggcaga
841 tgtttattct tttcaagaag aagaacctgt tttggatcct catttggcca agcacttagc
901 gcattttgga attgatatgc ttcatatgca tgggacagag aatgggctcc aggacaatga
961 catcaagctg agggtcagtg agtgggaagt gatccaggag tcgggcacga aactgaagcc
1021 aatgtatggt cctggctaca cgggtctgaa gaacctgggc aacagctgct atctcagctc
1081 tgtcatgcag gccatcttca gcatcccaga attccagaga gcgtatgtag gaaaccttcc
1141 cagaatattt gactactcgc ctttagatcc aacacaagat ttcaacacac agatgactaa
1201 gttaggacat ggccttctct caggccagta ttcaaagcct ccggtgaaat ctgaactcat
1261 tgaacaggtg atgaaggagg agcacaagcc acagcagaac gggatctctc cgcgcatgtt
1321 taaggccttt gtaagcaaga gccacccgga attctcctct aacaggcagc aagatgccca
1381 ggaattcttc ttgcacctgg tgaatctagt agagaggaac cgcatcggct cagaaaaccc
1441 aagcgatgtt tttcgttttt tggtggaaga acgcattcag tgctgtcaga cccggaaagt
1501 ccgctacacg gagagggtgg attacctgat gcagttacct gtggccatgg aggcggcaac
1561 caacaaggat gaactgatcg cttatgaact aacgagaagg gaagcagaag caaacagaag
1621 accccttcct gagttggtac gtgccaagat accatttagt gcctgccttc aggccttctc
1681 tgaaccagaa aatgttgatg atttctggag cagtgcccta caagcaaagt ctgcgggtgt
1741 gaaaacatct cgctttgctt cattccctga atacttggta gtgcagataa agaagttcac
1801 ttttggtctt gactgggttc ccaaaaaatt tgatgtttct attgatatgc cagacctact
1861 tgatatcaac catctccgag ccagggggtt acagccagga gaggaagaac ttccagacat
1921 cagccccccc atagtcattc ctgatgactc aaaagatcgc ctgatgaacc aattgataga
1981 cccatcagac atcgatgagt catcagtgat gcagctggcc gagatgggtt tcccgctgga
2041 agcatgtcgc aaggctgtgt acttcactgg aaatatgggc gccgaggtgg ccttcaactg
2101 gatcattgtt cacatggaag agccagattt tgctgagccg ctgaccatgc ctggttatgg
2161 aggggcagct tctgctggag cctctgtttt tggtgcttct ggactggata accaacctcc
2221 agaggaaatc gtagctatca tcacctccat gggatttcag cgaaatcagg ctattcaggc
2281 actacgagca acgaataata acctggaaag agcactggat tggatcttta gccaccctga
2341 gtttgaagaa gacagtgatt ttgtgattga gatggagaat aatgccaatg caaacattat
2401 ttctgaggcc aagcccgaag gacctagagt caaggatgga tctggaacat atgagctatt
2461 tgcattcatc agtcacatgg gaacatccac aatgagtggt cattacattt gccatatcaa
2521 aaaggaagga agatgggtga tttacaatga ccacaaagtt tgtgcctcag aaaggccccc
2581 taaagacctg ggctacatgt acttttaccg caggatacca agctaaacct caaatataaa
2641 aattggcgaa aagaagccat acgccttttt aatttgccaa aaaaaaaaaa aaaaaaaaaa
2701 aaaa
//