LOCUS BC016060 2426 bp mRNA linear HUM 04-JUN-2004
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, mRNA (cDNA
clone IMAGE:4903119), partial cds.
ACCESSION BC016060
VERSION BC016060.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2426)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2426)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: o Column: 10.
FEATURES Location/Qualifiers
source 1..2426
/db_xref="H-InvDB:HIT000037471"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4903119"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2426
/gene="DDX27"
/gene_synonym="dJ686N3.1"
/gene_synonym="DKFZp667N057"
/gene_synonym="FLJ12917"
/gene_synonym="FLJ20596"
/gene_synonym="FLJ22238"
/gene_synonym="HSPC259"
/gene_synonym="MGC1018"
/gene_synonym="PP3241"
/gene_synonym="RHLP"
/gene_synonym="Rrp3p"
/db_xref="GeneID:55661"
CDS <1..2306
/gene="DDX27"
/gene_synonym="dJ686N3.1"
/gene_synonym="DKFZp667N057"
/gene_synonym="FLJ12917"
/gene_synonym="FLJ20596"
/gene_synonym="FLJ22238"
/gene_synonym="HSPC259"
/gene_synonym="MGC1018"
/gene_synonym="PP3241"
/gene_synonym="RHLP"
/gene_synonym="Rrp3p"
/codon_start=3
/product="DDX27 protein"
/protein_id="AAH16060.2"
/db_xref="GeneID:55661"
/translation="DNMLADLGLIGTIGEDDEVPVEPESDSGDEEEEGPIVLGRRQKA
LGKNRSADFNPDFVFTEKEGTYDGSWALADVMSQLKKKRAATTLDEKIEKVRKKRKTE
DKEAKSGKLEKEKEAKEGSEPKEQEDLQENDEEGSEDEASETDYSSADENILTKADTL
KVKDRKKKKKKGQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKA
CIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQV
HSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLS
SIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPV
RIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRM
HILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVIN
FTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDV
ILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWF
QTKEERKKEKIAKALQEFDLALRGKKKRKKFMKDAKKKGEMTAEERSQFEILKAQMFA
ERLAKRNRRAKRARAMPEEEPVRGPAKKQKQGKKSVFDEELTNTSKKALKQYRASPSF
EERKQLGLPHQRRGGNFKSKSRYKRRK"
BASE COUNT 705 a 570 c 701 g 450 t
ORIGIN
1 gcgacaacat gcttgcggac ctcggcttaa tcggaaccat aggcgaggat gacgaggtgc
61 cggtggagcc cgagtctgac tccggggacg aggaagagga ggggcccatt gtgctgggca
121 gacgacaaaa agctttgggg aagaaccgca gtgctgattt caaccctgat ttcgttttca
181 ctgagaagga ggggacgtac gatggcagct gggccctggc tgatgtcatg agccaactca
241 agaagaagag ggcagccact acattagatg agaagattga gaaagttcga aagaaaagga
301 aaacagagga taaagaagcc aagtctggga agttggaaaa ggagaaagaa gcaaaggaag
361 gctctgaacc aaaggagcag gaagaccttc aagagaatga tgaggaaggc tcagaagatg
421 aagcctcgga gactgactac tcatcagctg atgagaacat cctcaccaaa gcagatacac
481 tcaaagtaaa ggatcggaag aagaagaaga agaaaggaca ggaagcagga ggattttttg
541 aagatgcatc tcagtacgat gaaaacctct cgttccagga catgaacctt tcccgccctc
601 ttctgaaggc cattacagcc atgggcttca agcagcccac cccgatccag aaggcgtgca
661 tacctgtggg tctattgggg aaggacatct gtgcctgtgc agccactggg acaggtaaaa
721 ctgccgcctt tgccctgcct gttttggagc gtctgattta taaaccccgc caggctccag
781 tcacccgcgt gctggtgcta gtgcccaccc gagagctggg catccaggtg cactctgtca
841 ccagacagct ggcccagttc tgcaacatca ccacctgcct ggctgtgggc ggcttggatg
901 tgaagtctca ggaagcagct cttcgggcag cgcctgacat cctcatcgcc accccaggcc
961 ggctcatcga tcacctccac aactgccctt ccttccacct gagcagcatc gaggtgctca
1021 tcctggacga ggctgacagg atgctggatg agtactttga ggagcagatg aaggagatca
1081 tccgaatgtg ttcccaccac cgccagacca tgctcttctc ggccaccatg acagacgagg
1141 tgaaagatct ggcttctgtc tccttgaaga atcctgtccg gatatttgtg aacagcaaca
1201 cagatgtggc tccctttctg cggcaggagt tcatccggat ccggcctaat cgtgaaggag
1261 accgggaagc catcgtggca gctttgttga cgaggacctt cactgaccat gtgatgctgt
1321 tcacgcaaac caagaagcag gcccaccgca tgcacatcct cctggggctc atggggctgc
1381 aggtgggtga gctccatggc aacttgtcac agacgcagcg gctggaggcc ctccggcgtt
1441 ttaaggatga acagattgac atcctcgtgg ccactgatgt ggcagcccgt ggacttgaca
1501 ttgagggggt caaaacggta atcaacttca caatgcctaa taccatcaaa cattatgtcc
1561 accgggtggg gcgaacagca cgtgctggca gggctgggcg ctcagtctct ctggtgggag
1621 aagatgagcg gaagatgctg aaggagattg taaaagctgc caaggcccct gtgaaggcca
1681 ggatacttcc ccaagatgtc atcctcaaat tccgggacaa gattgagaaa atggagaaag
1741 atgtgtatgc agttctgcag ctagaggcgg aggaaaaaga gatgcagcag tcagaagccc
1801 agatcaatac agcaaagcgg ctcctggaga aggggaagga ggcagtggtc caagagcccg
1861 agaggagctg gttccagacc aaagaagaga ggaagaagga gaaaattgcc aaagctctgc
1921 aggaatttga cttggcctta agaggaaaga agaaaaggaa gaagtttatg aaggatgcca
1981 aaaaaaaggg ggagatgaca gcagaggaaa ggtctcagtt tgaaatcctc aaggcgcaga
2041 tgtttgctga acggctagcg aagaggaatc gcagagccaa gcgggcccga gcaatgcccg
2101 aggaggagcc agtgagaggt cctgccaaga agcaaaagca ggggaagaaa tctgtatttg
2161 atgaagaact caccaacaca agcaagaagg ccctgaaaca gtatcgagct agcccttcct
2221 ttgaagaaag gaaacagttg ggcttgcccc accagagacg aggaggaaac tttaaatcta
2281 aatccagata caagaggagg aagtagctgt cgtggcctga agaaattcat gggggcagcc
2341 cttaaatccc ttccctgtgg gaagtcatcc tggctggtct gtcttttctc catttgttta
2401 aaaaaaaaaa aaaaaaaaaa aaaaaa
//