LOCUS BC016054 2991 bp mRNA linear HUM 16-SEP-2003 DEFINITION Homo sapiens neuron navigator 2, mRNA (cDNA clone IMAGE:4862141), complete cds. ACCESSION BC016054 VERSION BC016054.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2991) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2991) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (22-OCT-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, George Yang, Scott Zuyderduyn, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 34 Row: h Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 19923813 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..2991 /db_xref="H-InvDB:HIT000037467" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4862141" /tissue_type="Skin, melanotic melanoma, high MDR." /clone_lib="NIH_MGC_49" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2991 /gene="NAV2" /gene_synonym="FLJ10633" /gene_synonym="FLJ11030" /gene_synonym="FLJ23707" /gene_synonym="HELAD1" /gene_synonym="KIAA1419" /gene_synonym="POMFIL2" /gene_synonym="RAINB1" /db_xref="GeneID:89797" /db_xref="MIM:607026" CDS 23..2644 /gene="NAV2" /gene_synonym="FLJ10633" /gene_synonym="FLJ11030" /gene_synonym="FLJ23707" /gene_synonym="HELAD1" /gene_synonym="KIAA1419" /gene_synonym="POMFIL2" /gene_synonym="RAINB1" /codon_start=1 /product="NAV2 protein" /protein_id="AAH16054.1" /db_xref="GeneID:89797" /db_xref="MIM:607026" /translation="MSLSNPTMLRTHSLSNADGQYDPYTDSRFRNSSMSLDEKSRTMS RSGSFRDGFEEVHGSSLSLVSSTSSVYSTPEEKCQSEIRKLRRELDASQEKVSALTTQ LTANAHLVAAFEQSLGNMTIRLQSLTMTAEQKDSELNELRKTIELLKKQNAAAQAAIN GVINTPELNCKGNGTAQSADLRIRRQHSSDSVSSINSATSHSSVGSNIESDSKKKKRK NWLRSSFKQAFGKKSPKSASSHSDIEEMTDSSLPSSPKLPHNGSTGSTPLLRNSHSNS LISECMDSEAETVMQLRNELRDKEMKLTDIRLEALSSAHQLDQLREAMNRMQSEIEKL KAENDRLKSESQGSGCSRAPSQVSISASPRQSMGLSQHSLNLTESTSLDMLLDDTGEC SARKEGGRHVKIVVSFQEEMKWKEDSRPHLFLIGCIGVSGKTKWDVLDGVVRRLFKEY IIHVDPVSQLGLNSDSVLGYSIGEIKRSNTSETPELLPCGYLVGENTTISVTVKGLAE NSLDSLVFESLIPKPILQRYVSLLIEHRRIILSGPSGTGKTYLANRLSEYIVLREGRE LTDGVIATFNVDHKSSKELRQYLSNLADQCNSENNAVDMPLVIILDNLHHVSSLGEIF NGLLNCKYHKCPYIIGTMNQATSSTPNLQLHHNFRWVLCANHTEPVKGFLGRFLRRKL METEISGRVRNMELVKIIDWIPKVWHHLNRFLEAHSSSDVTIGPRLFLSCPIDVDGSR VWFTDLWNYSIIPYLLEAVREGLQLYGRRAPWEDPAKWVMDTYPWAASPQQHEWPPLL QLRPEDVGFDGYSMPREGSTSKQMPPSDAEGDPLMNMLMRLQEAANYSSPQSYDSDSN SNSHHDDILDSSLESTL" misc_feature 257..1060 /gene="NAV2" /gene_synonym="FLJ10633" /gene_synonym="FLJ11030" /gene_synonym="FLJ23707" /gene_synonym="HELAD1" /gene_synonym="KIAA1419" /gene_synonym="POMFIL2" /gene_synonym="RAINB1" /note="Smc; Region: Chromosome segregation ATPases [Cell division and chromosome partitioning]" /db_xref="CDD:COG1196" misc_feature 1625..1978 /gene="NAV2" /gene_synonym="FLJ10633" /gene_synonym="FLJ11030" /gene_synonym="FLJ23707" /gene_synonym="HELAD1" /gene_synonym="KIAA1419" /gene_synonym="POMFIL2" /gene_synonym="RAINB1" /note="AAA; Region: ATPases associated with a variety of cellular activities" /db_xref="CDD:smart00382" BASE COUNT 764 a 848 c 757 g 622 t ORIGIN 1 gagtcccacc actgtcaccc agatgagctt gtccaacccg accatgctga ggactcacag 61 cctctccaat gctgatgggc agtatgatcc atacactgac agccgcttcc ggaatagctc 121 catgtccctg gatgagaaga gcagaaccat gagccgttca ggctcattcc gggatgggtt 181 tgaagaagtt catggatcct cactctcctt ggtttccagc acatcgtcag tttattctac 241 accagaagaa aaatgccagt cagagattcg caagctgcgg cgggaactgg atgcctccca 301 ggagaaagtt tcagctttga ccacccagct gacagcaaac gctcaccttg tggcagcctt 361 tgaacagagt cttggtaaca tgacaatcag gctccagagt ctgaccatga cagctgagca 421 gaaggactca gaactgaatg agttaagaaa aaccattgag ctgctaaaga aacagaacgc 481 agctgcccag gctgccatta atggagtaat taacacacct gagctcaact gcaaaggaaa 541 cggcactgcc cagtctgcag acctccgcat ccgcaggcag cactcctcag acagcgtctc 601 cagcatcaac agtgccacca gccactccag cgtgggcagc aacatagaga gtgactcaaa 661 gaagaagaag cggaagaact ggttacgcag ctccttcaag caagctttcg ggaagaagtc 721 cccaaaatct gcgtcctctc attcagatat tgaggagatg acggattctt ctttgccttc 781 ctcaccaaag ttaccgcaca atgggtccac aggttccacc ccactgctga ggaattctca 841 ctccaactct ctaatttcag aatgcatgga tagtgaagct gagaccgtca tgcagctccg 901 aaatgagtta agagacaagg agatgaagct gacggatatc cgcttagaag ctctcagttc 961 tgcccaccag ctggaccagc tccgggaggc catgaacagg atgcagagtg aaatagagaa 1021 gctgaaagct gagaatgatc ggctgaagtc agagtctcaa ggcagtggct gcagccgggc 1081 tccttcccaa gtgtccatct ctgcctcccc gaggcagtcc atgggcctct cccagcacag 1141 cttgaacctc actgagtcaa ccagcctgga catgttgctg gatgacactg gtgaatgctc 1201 ggctcggaag gaaggaggca ggcatgttaa gatagttgtc agctttcagg aggaaatgaa 1261 gtggaaggag gattccagac cacatctctt tcttattggc tgcattggag ttagtggcaa 1321 gacgaagtgg gatgtgctcg atggggtggt tagacggctg ttcaaagaat acatcattca 1381 tgtcgaccca gtgagtcagc tagggctgaa ttcagacagc gttcttggct acagcattgg 1441 agaaatcaag cgcagcaaca cttccgaaac accggagctg cttccttgtg gctatctggt 1501 tggagagaac acgaccatct cagtgactgt gaaagggctc gcagaaaaca gcctggactc 1561 actggtgttt gagtccttga ttcccaagcc catcctgcag cgctacgtct ccctcctgat 1621 agagcaccgt cggatcattc tctctggccc cagcggcact gggaaaacct acctggccaa 1681 ccggctgtct gagtatatag tgcttcgaga gggacgggag ttgacagacg gggttatcgc 1741 cacctttaac gtggaccata agtccagcaa ggaattgcgc cagtacctgt ccaaccttgc 1801 tgaccagtgc aacagtgaga acaatgctgt ggacatgccc ctcgtcatca tcctggacaa 1861 cctacaccac gtgagctctc tgggcgagat cttcaatggg ctgctcaact gcaagtacca 1921 caaatgccct tacataattg gcacaatgaa ccaggctacc tcttcgactc ccaacctgca 1981 gcttcaccat aacttcagat gggtgctttg tgccaaccac acggagcctg tgaagggttt 2041 ccttggccga ttcctgagga ggaagctcat ggaaacagag atcagtgggc gggtgcgcaa 2101 tatggagctg gtaaaaatca ttgactggat tcccaaggtc tggcatcacc tcaaccgctt 2161 cctggaggct cacagttcct cggacgtcac catcggcccc cggctcttcc tgtcatgccc 2221 catcgatgtg gacggctcga gagtgtggtt caccgacttg tggaactatt ccattatccc 2281 ctatctcctg gaagccgtca gagaaggact ccagctctat ggaaggcgcg ccccctggga 2341 ggatcctgcc aagtgggtga tggacacata tccatgggca gccagcccac aacagcacga 2401 gtggcctccc ctgctgcagt tacggcctga ggatgtcggc ttcgacggct actccatgcc 2461 tcgggaggga tcgacaagca agcagatgcc ccccagtgat gctgaaggtg acccgctgat 2521 gaacatgctg atgaggctgc aggaggcagc caactactcc agcccccaga gctatgacag 2581 cgactccaac agcaacagcc atcacgatga catcttggac tcctctttgg agtccactct 2641 gtgacagggg cccggagccc agcgccctcc tcttctcctc accgcattcc acctgcatcc 2701 cccacatcac cctgaagatg acttcctgag ccagccccca gccacagcct tagagctgcg 2761 ggaacaccga gaccccccgt ccttcagcct cgacctgggt gcaggcatcc cgggccagct 2821 gcctgcggac cgcttccttc cacagcgaga actgcactac cttctgttgt actttaatta 2881 ttgttttgcc ttgttgctgt gacctcccta agacactgaa gatacttctc gggaaaggat 2941 catcgccgtt gaaatgaaaa gagagacaga gagaaaaaaa aaaaaaaaaa a //