LOCUS BC016034 3596 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens rhomboid 5 homolog 2 (Drosophila), mRNA (cDNA clone
MGC:17902 IMAGE:3910543), complete cds.
ACCESSION BC016034
VERSION BC016034.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3596)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3596)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: h Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 53828726.
FEATURES Location/Qualifiers
source 1..3596
/db_xref="H-InvDB:HIT000037457"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17902 IMAGE:3910543"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3596
/gene="RHBDF2"
/gene_synonym="FLJ22341"
/gene_synonym="RHBDL5"
/db_xref="GeneID:79651"
/db_xref="HGNC:HGNC:20788"
CDS 275..2845
/gene="RHBDF2"
/gene_synonym="FLJ22341"
/gene_synonym="RHBDL5"
/codon_start=1
/product="rhomboid 5 homolog 2 (Drosophila)"
/protein_id="AAH16034.2"
/db_xref="GeneID:79651"
/db_xref="HGNC:HGNC:20788"
/translation="MASADKNGGSVSSVSSSRLQSRKPPNLSITIPPPEKETQAPGEQ
DSMLPEGFQNRRLKKSQPRTWASHTTACPPSFLPKRKNPAYLKSVSLQEPRSRWQESS
EKRPGFRRQASLSQSIRKGAAQWFGVSGDWEGQRQQWQRRSLHHCSMRYGRLKASCQR
DLELPSQEAPSFQGTESPKPCKMPKIVDPLARGRAFRHPEEMDRPHALHPPLTPGVLS
LTSFTSVRSGYSHLPRRKRMSVAHMSLQAAAALLKGRSVLDATGQRCRVVKRSFAFPS
FLEEDVVDGADTFDSSFFSKEEMSSMPDDVFESPPLSASYFRGIPHSASPVSPDGVQI
PLKEYGRAPVPGPRRGKRIASKVKHFAFDRKKRHYGLGVVGNWLNRSYRRSISSTVQR
QLESFDSHRPYFTYWLTFVHVIITLLVICTYGIAPVGFAQHVTTQLVLRNKGVYESVK
YIQQENFWVGPSSIDLIHLGAKFSPCIRKDGQIEQLVLRERDLERDSGCCVQNDHSGC
IQTQRKDCSETLATFVKWQDDTGPPMDKSDLGQKRTSGAVCHQDPRTCEEPASSGAHI
WPDDITKWPICTEQARSNHTGFLHMDCEIKGRPCCIGTKGSCEITTREYCEFMHGYFH
EEATLCSQVHCLDKVCGLLPFLNPEVPDQFYRLWLSLFLHAGVVHCLVSVVFQMTILR
DLEKLAGWHRIAIIFILSGITGNLASAIFLPYRAEVGPAGSQFGLLACLFVELFQSWP
LLERPWKAFLNLSAIVLFLFICGLLPWIDNIAHIFGFLSGLLLAFAFLPYITFGTSDK
YRKRALILVSLLAFAGLFAALVLWLYIYPINWPWIEHLTCFPFTSRFCEKYELDQVLH
"
BASE COUNT 678 a 1202 c 1017 g 699 t
ORIGIN
1 gccgctcgca ggcgccgcac ggagttgcgt cccggggact tggggccgca gggagctgtg
61 agtacccagg aagctgcacc gtgtggcctg gagctgtcta tctgtccttc cagccacctg
121 tctgtccagc cacccttcca cagactgagg cttgacaccg gagcatctgt acagagcaag
181 gagaagacaa gaacatgctc taaagccctt cacagcaaga cccaggaagc cgcgggcaaa
241 ctcagactcg aagccctccc gcctcctgcc cacaatggcc tctgctgaca agaatggcgg
301 gagcgtgtcc tctgtgtcca gcagccgcct gcagagccgg aagccaccca acctctccat
361 caccatcccg ccacccgaga aagagaccca ggcccctggc gagcaggaca gcatgctgcc
421 tgagggtttt cagaatagga ggctaaagaa aagccagccc aggacctggg cttcacacac
481 caccgcctgc cctccctcct tcctccccaa gaggaagaac ccagcctact tgaagagcgt
541 cagcctccag gagccacgca gccgatggca ggagagttca gagaagcgcc ctggcttccg
601 ccgccaggcc tcactgtccc agagcatccg caagggcgca gcccagtggt ttggagtcag
661 cggcgactgg gaggggcagc ggcagcagtg gcagcgccgc agcctgcacc actgcagcat
721 gcgctacggc cgcctgaagg cctcgtgcca gcgtgacctg gagctcccca gccaggaggc
781 accgtccttc cagggcactg agtccccaaa gccctgcaag atgcccaaga ttgtggatcc
841 gctggcccgg ggccgggcct tccgccaccc ggaggagatg gacaggcccc acgccctgca
901 cccaccgctg acccccggag tcctgtccct cacctccttc accagtgtcc gttctggcta
961 ctcccacctg ccacgccgca agagaatgtc tgtggcccac atgagcttgc aagctgccgc
1021 tgccctcctc aaggggcgct cggtgctgga tgccaccgga cagcggtgcc gggtggtcaa
1081 gcgcagcttt gccttcccga gcttcctgga ggaggatgtg gtcgatgggg cagacacgtt
1141 tgactcctcc ttttttagta aggaagaaat gagctccatg cctgatgatg tctttgagtc
1201 ccccccactc tctgccagct acttccgagg gatcccacac tcagcctccc ctgtctcccc
1261 cgatggggtg caaatccctc tgaaggagta tggccgagcc ccagtccccg ggccccggcg
1321 cggcaagcgc atcgcctcca aggtgaagca ctttgccttt gatcggaaga agcggcacta
1381 cggcctcggc gtggtgggca actggctgaa ccgcagctac cgccgcagca tcagcagcac
1441 tgtgcagcgg cagctggaga gcttcgacag ccaccggccc tacttcacct actggctgac
1501 cttcgtccat gtcatcatca cgctgctggt gatttgcacg tatggcatcg cacccgtggg
1561 ctttgcccag cacgtcacca cccagctggt gctgcggaac aaaggtgtgt acgagagcgt
1621 gaagtacatc cagcaggaga acttctgggt tggccccagc tcgattgacc tgatccacct
1681 gggggccaag ttctcaccct gcatccggaa ggacgggcag atcgagcagc tggtgctgcg
1741 cgagcgagac ctggagcggg actcaggctg ctgtgtccag aatgaccact ccggatgcat
1801 ccagacccag cggaaggact gctcggagac tttggccact tttgtcaagt ggcaggatga
1861 cactgggccc cccatggaca agtctgatct gggccagaag cggacttcgg gggctgtctg
1921 ccaccaggac cccaggacct gcgaggagcc agcctccagc ggtgcccaca tctggcccga
1981 tgacatcact aagtggccga tctgcacaga gcaggccagg agcaaccaca caggcttcct
2041 gcacatggac tgcgagatca agggccgccc ctgctgcatc ggcaccaagg gcagctgtga
2101 gatcaccacc cgggaatact gtgagttcat gcacggctat ttccatgagg aagcaacact
2161 ctgctcccag gtgcactgct tggacaaggt gtgtgggctg ctgcccttcc tcaaccctga
2221 ggtcccagat cagttctaca ggctctggct gtctctcttc ctacatgctg gcgtggtgca
2281 ctgcctcgtg tctgtggtct ttcaaatgac catcctgagg gacctggaga agctggccgg
2341 ctggcaccgt atcgccatca tcttcatcct cagtggcatc acaggcaacc tcgccagtgc
2401 catctttctc ccataccggg cagaggtggg cccggccggc tcacagttcg gcctcctcgc
2461 ctgcctcttc gtggagctct tccagagctg gccgctgctg gagaggccct ggaaggcctt
2521 cctcaacctc tcggccatcg tgctcttcct gttcatctgt ggcctcctgc cctggatcga
2581 caacatcgcc cacatcttcg gcttcctcag tggcctgctg ctggccttcg ccttcctgcc
2641 ctacatcacc ttcggcacca gcgacaagta ccgcaagcgg gcactcatcc tggtgtcact
2701 gctggccttt gccggcctct tcgccgccct cgtgctgtgg ctgtacatct accccattaa
2761 ctggccctgg atcgagcacc tcacctgctt ccccttcacc agccgcttct gcgagaagta
2821 tgagctggac caggtgctgc actgaccgct gggccacacg gctgcccctc agccctgctg
2881 gaacagggtc tgcctgcgag ggctgccctc tgcagagcgc tctctgtgtg ccagagagcc
2941 agagacccaa gacagggccc gggctctgga cctgggtgcc cccctgccag gcgaggctga
3001 ctccgcgtga gatggttggt taaggcgggg tttttctggg gcgtgaggcc tgtgagatcc
3061 tgacccaagc tcaggcacac ccaaggcacc tgcctctctg agtcttgggt ctcagttcct
3121 aatatcccgc tccttgctga gaccatctcc tggggcaggg tccttttctt cccaggtcct
3181 cagcgctgcc tctgctggtg ccttctcccc cactactact ggagcgtgcc cttgctgggg
3241 acgtggctgt gccctcagtt gcccccaggg ctgggtgccc accatgcccc ttcctctttc
3301 tcctcctacc tctgccctgt gagcccatcc ataaggctct cagatgggac attgtgggaa
3361 aggctttggc catggtctgg gggcagagaa caagggggga gacacaagta gacctcaggt
3421 agaacgacac tgggcggagc caccccaggg cctgctccca gggagtgctc gaggcgcatc
3481 aggcccgttt tttaccagtt tatatcacgg tcttcatttt taaaagtaac gctaactttg
3541 tagggacgat gtctcatgga ttaaataata ttctttatgg caaaaaaaaa aaaaaa
//