LOCUS BC015916 2772 bp mRNA linear HUM 04-OCT-2003 DEFINITION Homo sapiens integrin, beta 7, mRNA (cDNA clone MGC:20174 IMAGE:4644086), complete cds. ACCESSION BC015916 VERSION BC015916.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2772) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2772) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (15-OCT-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, George Yang, Scott Zuyderduyn, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 29 Row: l Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4504776. FEATURES Location/Qualifiers source 1..2772 /db_xref="H-InvDB:HIT000037393" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:20174 IMAGE:4644086" /tissue_type="Colon, adenocarcinoma" /clone_lib="NIH_MGC_15" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2772 /gene="ITGB7" /db_xref="GeneID:3695" /db_xref="MIM:147559" CDS 72..2468 /gene="ITGB7" /codon_start=1 /product="ITGB7 protein" /protein_id="AAH15916.1" /db_xref="GeneID:3695" /db_xref="MIM:147559" /translation="MVALPMVLVLLLVLSRGESELDAKIPSTGDATEWRNPHLSMLGS CQPAPSCQKCILSHPSCAWCKQLNFTASGEAEARRCARREELLARGCPLEELEEPRGQ QEVLQDQPLSQGARGEGATQLAPQRVRVTLRPGEPQQLQVRFLRAEGYPVDLYYLMDL SYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPT RLERCQSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIG WRNVSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVA QALSAANIQPIFAVTSAALPVYQELSKLIPKSAVGELSEDSSNVVQLIMDAYNSLSST VTLEHSSLPPGVHISYESQCEGPEKREGKAEDRGQCNHVRINQTVTFWVSLQATHCLP EPHLLRLRALGFSEELIVELHTLCDCNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLG RLCECSVAELSSPDLESGCRAPNGTGPLCSGKGHCQCGRCSCSGQSSGHLCECDDASC ERHEGILCGGFGRCQCGVCHCHANRTGRACECSGDMDSCISPEGGLCSGHGRCKCNRC QCLDGYYGALCDQCPGCKTPCERHRDCAECGAFRTGPLATNCSTACAHTNVTLALAPI LDDGWCKERTLDNQLFFFLVEDDARGTVVLRVRPQEKGADHTQAIVLGCVGGIVAVGL GLVLAYRLSVEIYDRREYSRFEKEQQQLNWKQDSNPLYKSAITTTINPRFQEADSPTL " misc_feature 219..1499 /gene="ITGB7" /note="integrin_B; Region: Integrin, beta chain. Sequences cut off at repeats due to overlap with EGF" /db_xref="CDD:pfam00362" BASE COUNT 621 a 787 c 822 g 542 t ORIGIN 1 ctaaagccca gagagaaagt ctgacttgcc ccacagccag tgagtgactg cagcagcacc 61 agaatctggg catggtggct ttgccaatgg tccttgtttt gctgctggtc ctgagcagag 121 gtgagagtga attggacgcc aagatcccat ccacagggga tgccacagaa tggcggaatc 181 ctcacctgtc catgctgggg tcctgccagc cagccccctc ctgccagaag tgcatcctct 241 cacaccccag ctgtgcatgg tgcaagcaac tgaacttcac cgcgtcggga gaggcggagg 301 cgcggcgctg cgcccgacga gaggagctgc tggctcgagg ctgcccgctg gaggagctgg 361 aggagccccg cggccagcag gaggtgctgc aggaccagcc gctcagccag ggcgcccgcg 421 gagagggtgc cacccagctg gcgccgcagc gggtccgggt cacgctgcgg cctggggagc 481 cccagcagct ccaggtccgc ttccttcgtg ctgagggata cccggtggac ctgtactacc 541 ttatggacct gagctactcc atgaaggacg acctggaacg cgtgcgccag ctcgggcacg 601 ctctgctggt ccggctgcag gaagtcaccc attctgtgcg cattggtttt ggttcctttg 661 tggacaaaac ggtgctgccc tttgtgagca cagtaccctc caaactgcgc cacccctgcc 721 ccacccggct ggagcgctgc cagtcaccat tcagctttca ccatgtgctg tccctgacgg 781 gggacgcaca agccttcgag cgggaggtgg ggcgccagag tgtgtccggc aatctggact 841 cgcctgaagg tggcttcgat gccattctgc aggctgcact ctgccaggag cagattggct 901 ggagaaatgt gtcccggctg ctggtgttca cttcagacga cacattccat acagctgggg 961 acgggaagtt gggcggcatt ttcatgccca gtgatgggca ctgccacttg gacagcaatg 1021 gcctctacag tcgcagcaca gagtttgact acccttctgt gggtcaggta gcccaggccc 1081 tctctgcagc aaatatccag cccatctttg ctgtcaccag tgccgcactg cctgtctacc 1141 aggagctgag taaactgatt cctaagtctg cagttgggga gctgagtgag gactccagca 1201 acgtggtaca gctcatcatg gatgcttata atagcctgtc ttccaccgtg acccttgaac 1261 actcttcact ccctcctggg gtccacattt cttacgaatc ccagtgtgag ggtcctgaga 1321 agagggaggg taaggctgag gatcgaggac agtgcaacca cgtccgaatc aaccagacgg 1381 tgactttctg ggtttctctc caagccaccc actgcctccc agagccccat ctcctgaggc 1441 tccgggccct tggcttctca gaggagctga ttgtggagtt gcacacgctg tgtgactgta 1501 attgcagtga cacccagccc caggctcccc actgcagtga tggccaggga cacctacaat 1561 gtggtgtatg cagctgtgcc cctggccgcc taggtcggct ctgtgagtgc tctgtggcag 1621 agctgtcctc cccagacctg gaatctgggt gccgggctcc caatggcaca gggcccctgt 1681 gcagtggaaa gggtcactgt caatgtggac gctgcagctg cagtggacag agctctgggc 1741 atctgtgcga gtgtgacgat gccagctgtg agcgacatga gggcatcctc tgcggaggct 1801 ttggtcgctg ccaatgtgga gtatgtcact gtcatgccaa ccgcacgggc agagcatgcg 1861 aatgcagtgg ggacatggac agttgcatca gtcccgaggg agggctctgc agtgggcatg 1921 gacgctgcaa atgcaaccgc tgccagtgct tggacggcta ctatggtgct ctatgcgacc 1981 aatgcccagg ctgcaagaca ccatgcgaga gacaccggga ctgtgcagag tgtggggcct 2041 tcaggactgg cccactggcc accaactgca gtacagcttg tgcccatacc aatgtgaccc 2101 tggccttggc ccctatcttg gatgatggct ggtgcaaaga gcggaccctg gacaaccagc 2161 tgttcttctt cttggtggag gatgacgcca gaggcacggt cgtgctcaga gtgagacccc 2221 aagaaaaggg agcagaccac acgcaggcca ttgtgctggg ctgcgtaggg ggcatcgtgg 2281 cagtggggct ggggctggtc ctggcttacc ggctctcggt ggaaatctat gaccgccggg 2341 aatacagtcg ctttgagaag gagcagcaac aactcaactg gaagcaggac agtaatcctc 2401 tctacaaaag tgccatcacg accaccatca atcctcgctt tcaagaggca gacagtccca 2461 ctctctgaag gagggaggga cacttaccca aggctcttct ccttggagga cagtgggaac 2521 tggagggtga gaggaagggt gggtctgtaa gaccttggta ggggactaat tcactggcga 2581 ggtgcggcca ccaccctact tcattttcag agtgacaccc aagagggctg cttcccatgc 2641 ctgcaacctt gcatccatct gggctacccc acccaagtat acaataaagt cttacctcag 2701 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2761 aaaaaaaaaa aa //