LOCUS BC015913 1578 bp mRNA linear HUM 07-OCT-2003
DEFINITION Homo sapiens cold shock domain protein A, mRNA (cDNA clone
MGC:20058 IMAGE:4563632), complete cds.
ACCESSION BC015913
VERSION BC015913.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1578)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1578)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (15-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: g Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21359983.
FEATURES Location/Qualifiers
source 1..1578
/db_xref="H-InvDB:HIT000037390"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20058 IMAGE:4563632"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1578
/gene="CSDA"
/gene_synonym="DBPA"
/gene_synonym="ZONAB"
/db_xref="GeneID:8531"
/db_xref="MIM:603437"
CDS 186..1097
/gene="CSDA"
/gene_synonym="DBPA"
/gene_synonym="ZONAB"
/codon_start=1
/product="CSDA protein"
/protein_id="AAH15913.1"
/db_xref="GeneID:8531"
/db_xref="MIM:603437"
/translation="MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAA
APAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRN
GYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP
DGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPTY
RPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAP
SQDGKEAKAGEAPTENPAPPTQQSSAE"
misc_feature 453..665
/gene="CSDA"
/gene_synonym="DBPA"
/gene_synonym="ZONAB"
/note="cold; Region: Cold Shock RNA binding domain of the
OB fold"
/db_xref="CDD:LOAD_cold"
BASE COUNT 435 a 460 c 412 g 271 t
ORIGIN
1 cgagcgcgca gcacgaagct cgagccgcct ccgccgcgcg accccacctc ggccgccgcc
61 gcctgcgccg cgagatccgc cccggcctcc ccgagagcga gccccggccg ccgcgaccac
121 cagccgcgct aaccgccgac caaccgccac cgaggcgcct gagcgagagc agaggaggag
181 gaggcatgag tgaggcgggc gaggccacca ccaccaccac caccaccctc ccgcaggctc
241 cgacggaggc ggccgccgcg gctccccagg accccgcgcc caagagcccg gtgggcagcg
301 gtgcgcccca ggccgcggcc ccggcgcccg ccgcccacgt cgcaggaaac cccggtgggg
361 acgcggcccc cgcagccacg ggcaccgcgg ccgccgcctc tttagccacc gccgccggca
421 gcgaagacgc ggagaaaaaa gttctcgcca ccaaagtcct tggcactgtc aaatggttca
481 acgtcagaaa tggatatgga tttataaatc gaaatgacac caaagaagat gtatttgtac
541 atcagactgc catcaagaag aataacccac ggaaatatct gcgcagtgta ggagatggag
601 aaactgtaga gtttgatgtg gttgaaggag agaagggtgc agaagctgcc aatgtgactg
661 gcccggatgg agttcctgtg gaagggagtc gttacgctgc agatcggcgc cgttacagac
721 gtggctacta tggaaggcgc cgtggccctc cccggaatgc tggtgagatt ggagagatga
781 aggatggagt cccagaggga gcacaacttc agggaccggt tcatcgaaat ccaacttacc
841 gcccaaggta ccgtagcagg ggacctcctc gcccacgacc tgccccagca gttggagagg
901 ctgaagataa agaaaatcag caagccacca gtggtccaaa ccagccgtct gttcgccgtg
961 gataccggcg tccctacaat taccggcgtc gcccgcgtcc tcctaacgct ccttcacaag
1021 atggcaaaga ggccaaggca ggtgaagcac caactgagaa ccctgctcca cccacccagc
1081 agagcagtgc tgagtaacac caggctcctc aggcaccttc accatcggca ggtgacctaa
1141 agaattaatg accattcaga aataaagcaa aaagcaggcc acaaccttaa ccaacaccaa
1201 agaaacatcc aagcaataaa gtggaagact aaccaagatt tggacattgg aatgtttact
1261 gttattcttt aagaaacagc tacaaaaaga aaatgtcaac aaatttttcc agcaagctga
1321 gaacctggga attcctgcac ggaagacaag agagtagcct ctccagtttc agcaaccgct
1381 aggtttctat tttttttcct ggtttttact gttttggtaa tatatatatt gaaacaagaa
1441 atattaatac cacatgggga gaaccccaac caaagaaatc tgaaatatat agtaaatgct
1501 tttttttccg tttttgttca ttttggatgc tggtgctaaa cctccaagtg tcatgattta
1561 aaaaaaaaaa aaaaaaaa
//