LOCUS BC015706 2511 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens chromosome 18 open reading frame 24, mRNA (cDNA clone
MGC:10200 IMAGE:3909951), complete cds.
ACCESSION BC015706
VERSION BC015706.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2511)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2511)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: g Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21450831
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2511
/db_xref="H-InvDB:HIT000037264"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10200 IMAGE:3909951"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2511
/gene="C18orf24"
/gene_synonym="Ska1"
/db_xref="GeneID:220134"
/db_xref="HGNC:HGNC:28109"
CDS 174..941
/gene="C18orf24"
/gene_synonym="Ska1"
/codon_start=1
/product="C18orf24 protein"
/protein_id="AAH15706.1"
/db_xref="GeneID:220134"
/db_xref="HGNC:HGNC:28109"
/translation="MASSDLEQLCSHVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGD
EIIVINELLNKLELEIQYQEQTNNSLKELCESLEEDYKDIEHLKENVPSHLPQVTVTQ
SCVKGSDLDPEEPIKVEEPEPVKKPPKEQRSIKEMPFITCDEFNGVPSYMKSRLTYNQ
INDVIKEINKAVISKYKILHQPKKSMNSVTRNLYHRFIDEETKDTKGRYFIVEADIKE
FTTLKADKKFHVLLNILRHCRRLSEVRGGGLTRYVIT"
BASE COUNT 725 a 526 c 536 g 724 t
ORIGIN
1 cggaagcatg gatgtgcgcc tgcgctgcgc tagggcgcgg cgggcggttt gaattttgct
61 tacagagtcc cgtctcacca tcctgggctt ccaacggaga ctgcggtatc cgcggctgga
121 gacccagcgg cgagtagcct tttgctcccg gacggacttg agaggcttaa aggatggcct
181 cgtcagatct ggaacaatta tgctctcatg ttaatgaaaa gattggcaat attaagaaaa
241 ccttatcatt aagaaactgt ggccaggaac ctaccttgaa aactgtatta aataaaatag
301 gagatgagat cattgtaata aatgaacttc taaataaatt ggaattggaa attcagtatc
361 aagaacaaac caacaattca ctcaaggaac tctgtgaatc tcttgaagaa gattacaaag
421 acatagaaca tcttaaagaa aacgttcctt cccatttgcc tcaagtaaca gtaacccaga
481 gctgtgttaa gggatcagat cttgatcctg aagaaccaat caaagttgaa gaacctgaac
541 ccgtaaagaa gcctcccaaa gagcaaagaa gtattaagga aatgccattt ataacttgtg
601 atgagttcaa tggtgttcct tcgtacatga aatcccgctt aacctataat caaattaatg
661 atgttattaa agaaatcaac aaggcagtaa ttagtaaata taaaatccta catcagccaa
721 aaaagtctat gaattctgtg accagaaatc tctatcacag atttattgat gaagaaacga
781 aggataccaa aggtcgttat tttatagtgg aagctgacat aaaggagttc acaactttga
841 aagctgacaa gaagtttcac gtgttactga atattttacg acactgccgg aggctatcag
901 aggtccgagg gggaggactt actcgttatg ttataacctg agtcccttgt gaacttttga
961 acataccaac agggtataga gtatagaggc tatttctata attttcttat atataatttt
1021 tttaactttt aatctttttt gtttcctttt tttttttttg agacaggatc ttgctttgtc
1081 acccaggggc ttgctttgtc acgcaggcta gagtgcagtg gcgcaaacat ggctcactgc
1141 agcctcaacc tcccaggctc aagtgatcct cccacctcag ccccctgaat ggctgggact
1201 acaagcgtgc gccaccatgc ctggctaatt tttgtatttt ttggagagat ggggtttcac
1261 catgttgcct aggctggtct tgagctcctg agctcaaaca atccaccctc ctcagcctcc
1321 caaagtgctg ggattacagg cttgagccac cacacctgac ctattcttgt ttcttataaa
1381 aataaaactt ttttggataa agcttatttc ttgttttttt ctttttcttt tttttttttt
1441 gagacagtct cgctctttca cccaggccgg actgcagcgg cgctatctcg gctcgctgca
1501 aactctgcct cccaggttca cgccatcctc ctgcctcagc tactcaggag aattgcttga
1561 acctgggagg tggaggttgc agtgagccga gatcgtgcca ctgcactcca gtctgggcaa
1621 cagagcgaga ctccatctca gaaaaaaaga aaaaaagact gggtacagat gtgatattgg
1681 aagaaaaaga tcaagctgat gaggttagga tacccaggcc ctttggactt aaagatcact
1741 agtgtctaaa ttccatcgat ggcatttcag tctataggta aacttcctgg aagctggatt
1801 tggagacagt ttatcatctg attattgggc tttcgtatag gtccttaggg agcagcttac
1861 ctgaaatgca tttagtgtac accagtctgt aaacttcaac ctgtaatgaa agtgtaataa
1921 atgtacattg agttgatgtg ataatgtgat ataataagaa atatatattt gatcttccta
1981 tctagttcct tgttcagagc tcctaaaacc cttgtaattt ccaaagtgat ggagtacatc
2041 ttttgttcta gtatttggtc tttgacccca gttcctgaca caaagctcct aaattccttt
2101 aaatttccca gtgataggag aattttttgt tctaatgagg tcactcttga tgggcacctg
2161 gataactcag gatgggggct gctcacaaag accacatcat gattggaagt ttcaaacttt
2221 cagtctccca cctccagaga ggggagaggg gctggagatt tgtgtcaata atccatcagg
2281 cctatgtcaa caagacataa tccgttaact atggagttca gggagcttca gggttggcaa
2341 acattttgat gtgccaggaa ggtgacgcac tccagcttta tgaagtcagc aagtcctgtg
2401 ctcaggatgc ttctggacct tgccccaggt accccttcat gtggctgttg ttcatctgta
2461 tcctttgtag tagccttaaa ataaactgtt aaacacaaaa aaaaaaaaaa a
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