LOCUS BC015684 1256 bp mRNA linear HUM 08-FEB-2007
DEFINITION Homo sapiens tripartite motif family-like 1, mRNA (cDNA clone
IMAGE:4650977), complete cds.
ACCESSION BC015684
VERSION BC015684.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1256)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1256)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC015684.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 33 Row: h Column: 19
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1256
/db_xref="H-InvDB:HIT000037256"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4650977"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1256
/gene="TRIML1"
/gene_synonym="FLJ36180"
/gene_synonym="RNF209"
/db_xref="GeneID:339976"
/db_xref="HGNC:HGNC:26698"
CDS 289..867
/gene="TRIML1"
/gene_synonym="FLJ36180"
/gene_synonym="RNF209"
/codon_start=1
/product="TRIML1 protein"
/protein_id="AAH15684.1"
/db_xref="GeneID:339976"
/db_xref="HGNC:HGNC:26698"
/translation="MKEMLRKFSTEITLDPATANAYLVLSEDLKSVKYGGSRQQLPDN
PERFDQSATVLGTQIFTSGRHYWEVEVGNKTEWEVGICKDSVSRKGNLPKPPGDLFSL
IGLKIGDDYSLWVSSPLKGQHVREPVCKVGVFLDYESGHIAFYNGTDESLIYSFPQAS
FQEALRPIFSPCLPNEGTNTDPLTICSLNSHV"
BASE COUNT 351 a 310 c 293 g 302 t
ORIGIN
1 gaaacacctt gtgttcacca cagcacatcc ctggaagaaa ctggggacgc ttttctctgc
61 tctctgtgct cccactcatg gtgtgcttca tgggaagcag attctgtgag ctttgcaagg
121 actgtatgca aaatgaattt cgtctgtgtt atgatgaaag cgcaccatgc taacttcttt
181 cttttttacc cgtaggaagt gagaggagcc ctggaaagga gcgagccact cttgcttcag
241 tgtccagagg ccaccaccac agagctgagt ctgtgccgca tcacgggaat gaaggagatg
301 ctaagaaaat tcagcacgga gataacgctg gacccagcca cagctaatgc ctatctcgtg
361 ttgtcggagg atctgaagag tgtgaaatat gggggaagca gacagcagct acccgacaac
421 ccggaaagat ttgaccagtc tgcgactgtg ctgggtactc agatcttcac cagtgggaga
481 cactactggg aggtggaggt gggaaacaag accgagtggg aagtgggcat ctgcaaggac
541 tctgtgagca gaaaggggaa tctccccaag ccacctgggg acctgttctc actaataggt
601 ttaaaaatcg gagatgatta cagcctctgg gtctcgtcac ctttgaaagg tcagcacgtc
661 agagagcctg tgtgtaaggt tggtgtcttc ctggactatg aatctggaca tatagcattc
721 tacaacggga cggatgaatc cctcatctac agcttcccgc aggcttcttt ccaagaggcc
781 ctcaggccta tcttttcccc ctgcctccca aatgagggga caaacacaga ccctctcacc
841 atctgctcac tgaacagcca cgtctgaggg gcgtgccctg agccgtcaca gcgggcgatg
901 tctgagacca agacacaact attaagacga tgaaggcatc gacagtatta atgtcaggtg
961 atctgaaata aactcccgta accccacccc acccccaaga gtttccatta acttgatccc
1021 attatgaaca gccacattac acaatcaact tcaaccccaa tagaagagag ctgatcatat
1081 tctgtgtctt taagtaaatg tattctctgg gctaccccat gtgtgtgctg gtcactcaaa
1141 tattgagccc ctattaccat gaatcctact gccataggcc agattttata aatatatgtc
1201 actttttcaa gtgtatttaa ttatttgact cttaaaaaaa aaaaaaaaaa aaaaaa
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