LOCUS BC015651 1420 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens scavenger receptor cysteine rich domain containing,
group B (4 domains), mRNA (cDNA clone IMAGE:4762075), complete cds.
ACCESSION BC015651
VERSION BC015651.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1420)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1420)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (04-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC015651.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 33 Row: k Column: 18
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1420
/db_xref="H-InvDB:HIT000037241"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4762075"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_47"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1420
/gene="SRCRB4D"
/gene_synonym="S4D-SRCRB"
/gene_synonym="SRCRB-S4D"
/db_xref="GeneID:136853"
/db_xref="MIM:607639"
CDS 97..669
/gene="SRCRB4D"
/gene_synonym="S4D-SRCRB"
/gene_synonym="SRCRB-S4D"
/codon_start=1
/product="SRCRB4D protein"
/protein_id="AAH15651.1"
/db_xref="GeneID:136853"
/db_xref="MIM:607639"
/translation="MTGTLRTRAWPAAKRAAGLRWALRDEARLSDCFHLGWGQHNCGH
HEDAGALCAGEADSEGPEELGLQVQQDGSETTRVPTPRPRDGHLRLVNGAHRCEGRVE
LYLGQRWGTVCDDAWDLRAAGVLCRQLGCGQALAAPGEAHFGPGRGPILLDNVKCRGE
ESALLLCSHIRWDAHNCDHSEDASVLCQPS"
misc_feature 169..252
/gene="SRCRB4D"
/gene_synonym="S4D-SRCRB"
/gene_synonym="SRCRB-S4D"
/note="SR; Region: Scavenger receptor Cys-rich"
/db_xref="CDD:smart00202"
misc_feature 358..660
/gene="SRCRB4D"
/gene_synonym="S4D-SRCRB"
/gene_synonym="SRCRB-S4D"
/note="SR; Region: Scavenger receptor Cys-rich"
/db_xref="CDD:smart00202"
BASE COUNT 270 a 432 c 441 g 277 t
ORIGIN
1 ccgcaggtgg gcggctgcga ctggtgggcg gcccgggtcc gtgccgcggc cgcgtggagg
61 tgttgcacgc cgggggctgg ggcaccgtgt gcgacgatga ctgggacttt gcggacgcgc
121 gcgtggcctg ccgcgaagcg ggctgcgggc ctgcgctggg cgctacggga cgaggctcgc
181 ctgagcgact gcttccacct gggctggggc cagcacaact gcggccacca cgaggacgcg
241 ggagcgctct gcgcaggtga ggctgacagc gaaggcccag aggagctggg actgcaagtc
301 cagcaggatg gttctgagac cacgcgggtg cccactcctc ggcccaggga cgggcatcta
361 cgtctggtca atggagccca ccgatgcgag ggacgtgtag agctctacct agggcaacgg
421 tggggcactg tctgtgatga tgcttgggac ctgcgggcag ccggtgtcct gtgccgccag
481 ctgggctgtg gccaggccct cgcagcccct ggcgaggctc actttggccc aggccgaggc
541 cccattctcc tggacaatgt caagtgccgt ggggaagaaa gtgctctgct gctctgctct
601 catatccgct gggatgccca caactgtgac cacagcgagg atgccagtgt cctgtgccag
661 ccttcatgac ccagcccgct ctgcagacca cctcttcttc tgggagctgt gacctccctt
721 cctcctccag gaagccctcc tcttgtgatg actacagttc actttgcccc tccttccctt
781 gcctgggaga gagcctacct agacagtgca gtcctgcttg ggggagcctg gctgtacccc
841 cgtccactta ctgcgtgacc tcagcctgtc atcgactgtt gtgagcccaa ttcagtgaaa
901 gctcctgtgg ttttgctcag ccaaaaccaa aacgagggga agaggatgat tcctaactct
961 tctgtttggt ggggctcttt ttatagcacc agactctgcc ttccttgacc tagatccagg
1021 aggctcagga gctctttaaa tggggtatct cctcttcccc caacccatct tgggatcccc
1081 aagaagaggg aaggcaggag gggcctacag ctcctacctt gggccctcag gggctgcaga
1141 ggaacctggg tccctgtcct gccctgctcc gcgagggcct ggactaactc agatggtgct
1201 cggctggaca aggggactgg gggaggggcc aaagcaggga cagtggcccc tccctgcagc
1261 tggaaccagc atctctgatt tatgccgtct ccaccacaga gcctccactt tgcaggagtg
1321 aagaaccctg ggggcctgta gccaccagtt cataggtgcc aagtcaataa agcattgtcc
1381 cccgtctctt aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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