LOCUS BC015409 1387 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens collagen, type IX, alpha 1, mRNA (cDNA clone
IMAGE:4392252), complete cds.
ACCESSION BC015409
VERSION BC015409.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1387)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1387)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 27 Row: b Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 17978501
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1387
/db_xref="H-InvDB:HIT000037114"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4392252"
/tissue_type="Breast, mammary adenocarcinoma."
/clone_lib="NIH_MGC_87"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1387
/gene="COL9A1"
/gene_synonym="DJ149L1.1.2"
/gene_synonym="MED"
/db_xref="GeneID:1297"
/db_xref="MIM:120210"
CDS 147..1133
/gene="COL9A1"
/gene_synonym="DJ149L1.1.2"
/gene_synonym="MED"
/codon_start=1
/product="COL9A1 protein"
/protein_id="AAH15409.1"
/db_xref="GeneID:1297"
/db_xref="MIM:120210"
/translation="MKTCWKIPVFFFVCSFLEPWASAAVKRRPRFPVNSNSNGGNELC
PKIRIGQDDLPGFDLISQFQVDKAASRRAIQRVVGSATLQVAYKLGNNVDFRIPTRNL
YPSGLPEEYSFLTTFRMTGSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGL
DGSLQTAAFSNLSSLFDSQWHKIMIGVERSSATLFVDCNRIESLPIKPRGPIDIDGFA
VLGKLADNPQVSVPFELQWMLIHCDPLRPRRETCHELPARITPSQTTDERGPPGEQGP
PGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPGADTSP"
misc_feature 294..878
/gene="COL9A1"
/gene_synonym="DJ149L1.1.2"
/gene_synonym="MED"
/note="TSPN; Region: Thrombospondin N-terminal -like
domain"
/db_xref="CDD:pfam02210"
BASE COUNT 391 a 320 c 331 g 345 t
ORIGIN
1 ccctcaccgg gggcaggagg gaccaaggct gggcccagaa cacatagtcc tagggtaaca
61 gtgaaggggt cgtgagggga cagtgactcc cttccaaccc cttcttcata gggactgttg
121 gcaaacaaag aaaatcaact gggaaaatga agacctgctg gaaaattcca gttttcttct
181 ttgtgtgcag tttcctggaa ccctgggcat ctgcagctgt caagcgtcgc cccagattcc
241 ctgtcaattc caattctaat ggtggaaatg aactctgtcc aaagatcagg attggccaag
301 atgacttacc agggtttgat ctgatctctc agttccaggt agataaagca gcatctagaa
361 gagctatcca gagagtagtg ggatcagcta cattgcaggt ggcttacaag ttgggaaata
421 atgtagactt caggattcca actaggaatt tatatcccag tggactgcct gaagaatact
481 ccttcttgac gacgtttcga atgactggaa gcactctcaa aaagaactgg aacatttggc
541 agattcagga ttcctctggg aaggagcaag ttggcataaa gattaatggc caaacacaat
601 ctgttgtatt ttcatacaag ggactggatg gaagtctcca aacagcagcc ttttcgaatt
661 tgtcctcctt gtttgattcc cagtggcata agatcatgat tggcgtggag aggagtagtg
721 ctactctttt tgttgactgc aacaggattg aatctttacc tataaagcca agaggcccaa
781 ttgacattga tggctttgct gtgctgggaa aacttgcaga taatcctcaa gtttctgttc
841 catttgaact tcaatggatg ctgatccatt gtgaccccct gcggcccagg agagaaactt
901 gccatgagct gccagccaga ataacgccca gccagaccac cgacgagaga ggtcccccgg
961 gtgagcaggg tcctcccggg cctccgggcc cccctggagt tccaggcatc gatggcatcg
1021 acggtgaccg aggtcctaag ggccccccgg gccccccggg tcctgcaggt gaaccgggaa
1081 agccaggagc tccaggcaag cctggcacac ctggcgctga taccagtcct tgactttgtc
1141 cctggaatat gaagtgaagt aagaaatggc gtctgttctt agcataccat ggtgcatcac
1201 tcaagttact cttcaagtta ccactttatg tgttttccaa aaactaaaga cttttctaaa
1261 tgaaagaaag cactcgaaaa cctataatta tgatttccaa gaatttttga ctacagttta
1321 agacatatcc ttcattttga aagaaaaata aataactgga tttttactgt taaaaaaaaa
1381 aaaaaaa
//