LOCUS BC015351 1489 bp mRNA linear HTC 11-SEP-2007
DEFINITION Homo sapiens SET translocation (myeloid leukemia-associated)
pseudogene, mRNA (cDNA clone IMAGE:4420333), with apparent retained
intron.
ACCESSION BC015351
VERSION BC015351.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1489)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1489)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 27 Row: j Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..1489
/db_xref="H-InvDB:HIT000088633"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4420333"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 495 a 272 c 328 g 394 t
ORIGIN
1 aaaaaaaagt gtttaaaaaa aatgatgctg gtaccattgg atgtccaaat gtaaaacaaa
61 aacaaaacaa acagtcttct gcctgcttct ggacgagcga ggagacttgt ggtctggttc
121 ttggacttcc ctagcagcgt ggcatccaaa cgccaatctc cactctcacc tcaaaagaag
181 aaatcaagac cacctcctgc tctgggaccg gaggagacat tggcctctgc aggcttgcca
241 aagtaggaag aaaaagaaca gcaagaagcc attgaacaca ttgatgaagt acaaaatgaa
301 atagacagac ttaatgaata agccagtgag gagattttga aagtagagca gaaatataag
361 aaaatctgcc aaccattttt tcagaagggg tcagaattga tagccaaaat tccaaatttt
421 ggggtaacaa catttgtcaa ccatccacaa gtgtctacac tgcttgggga ggaggacgaa
481 gaggcactgc attatttgac cagagttgaa gtgacagaat ttgaaaatat taaatcaggt
541 tagagaatag atttttattt tgatgaaaat ccttactttg aaaataaagt tctctccaaa
601 taatttcatc tgtatgagaa tgatgatcca tcttcaaagt ccactgaaat caaatggaaa
661 tctggaaagg atttgatgaa atattcaagt caaacacaga ataaagccag caagaagagg
721 cagcatgagg aaccagagag cttctttacc tggtttactg accattctga tgcaggtgct
781 gatgagttag acgtcaacaa agacgatatt tggccaaacc cattacagta ctacttggtt
841 ccccatatgg atgatgaaga aggggaagga ggagatgatg atgatgaaga agaggaggaa
901 ggattagaag atattagtga agaaggggat gaggatgaaa gtgaagaaga tgaagatgat
961 gatgaagggg aggatggaga ggaggatgaa agagaagatg actaatagaa cactgatgga
1021 tttcaagctt cctttttcta aattttctcc agtccctggg aacaagttgc agtctttttt
1081 cacccccacc cctcttgttc tcagttgccc tcttcttgag atctcttttc tttacactat
1141 gtttctcaac ctatttgggg gaaaatacct tgtgcagaat gcaatgggaa aagagtctct
1201 acccctttct gtttgaaatt catttttatc cctttctgtc tgaacaaaaa ctgtatggaa
1261 tcaacaccac cgagctctgt gggaaaaaag aaaaacctgc tcccttcact ctgctggaag
1321 ctgcagggtg ctaggcccct gtgtagtagt gcataaaatt ctagcttttt tcctcctttc
1381 tctgtatatt gggctcagag agtgcactgt gtctccatgt gaatatggac ggttagcatt
1441 taccaacatg tgtctgtcta ctttctcttg tttaaaaaaa aaaaaaaaa
//