LOCUS BC015323 1434 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens polybromo 1, mRNA (cDNA clone IMAGE:4397664), complete
cds.
ACCESSION BC015323
VERSION BC015323.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1434)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1434)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 27 Row: d Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922564
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1434
/db_xref="H-InvDB:HIT000037075"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4397664"
/tissue_type="Duodenum, adenocarcinoma"
/clone_lib="NIH_MGC_88"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1434
/gene="PB1"
/gene_synonym="BAF180"
/db_xref="GeneID:55193"
/db_xref="MIM:606083"
CDS 279..1199
/gene="PB1"
/gene_synonym="BAF180"
/codon_start=1
/product="PB1 protein"
/protein_id="AAH15323.1"
/db_xref="GeneID:55193"
/db_xref="MIM:606083"
/translation="MGEEDSEVIEPPSLPQLQTPLASELDLMPYTPPQSTPKSAKGSA
KKEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKKAEYEG
MMGGYPPGLPPLQGPVDGLVSMGSMQPLHPGGPPPHHLPPGVPGLPGIPPPGVMNQGV
APMVGTPAPGGSPYGQQVGVLGPPGQQAPPPYPGPHPAGPPVIQQPTTPMFVAPPPKT
QRLLHSEAYLKYIEGLSAESNSISKWDQTLAARRRDVHLSKEQESRLPSHWLKSKGAH
TTMADALWRLRDLMLRDTLNIRQAYNLENV"
misc_feature 438..572
/gene="PB1"
/gene_synonym="BAF180"
/note="HMG; Region: high mobility group"
/db_xref="CDD:smart00398"
BASE COUNT 413 a 360 c 342 g 319 t
ORIGIN
1 tgtcattcaa ggacttcctc tcctgcaggc caactgaaat accagaaaat gacattctgc
61 tttgtgagag ccgctacaat gagagcgaca agcagatgaa gaaattcaaa ggattgaaga
121 ggttttcact ctctgctaaa gtggtagatg atgaaattta ctacttcaga aaaccaattg
181 ttcctcagaa ggagccatca cctttgctgg aaaagaagat ccagttgcta gaagctaaat
241 ttgccgagtt agaaggtgga gatgatgata ttgaagagat gggagaagaa gatagtgagg
301 tcattgaacc tccttctcta cctcagcttc agacccccct ggccagtgag ctggacctca
361 tgccctacac acccccacag tctaccccaa agtctgccaa aggcagtgca aagaaggaag
421 gctccaaacg gaaaatcaac atgagtggct acatcctgtt cagcagtgag atgagggctg
481 tgattaaggc ccaacaccca gactactctt tcggggagct cagccgcctg gtggggacag
541 aatggagaaa tcttgagaca gccaagaaag cagaatatga aggcatgatg ggtggctatc
601 cgccaggcct tccacctttg cagggcccag ttgatggcct tgttagcatg ggcagcatgc
661 agccacttca ccctgggggg cctccacccc accatcttcc gccaggtgtg cctggcctcc
721 cgggcatccc accaccgggt gtgatgaacc aaggagtggc ccctatggta gggactccag
781 caccaggtgg aagtccatat ggacaacagg tgggagtttt ggggcctcca gggcagcagg
841 caccacctcc atatcccggc ccacatccag ctggaccccc tgtcatacag cagccaacaa
901 cacccatgtt tgtagctccc ccaccaaaga cccagcggct tcttcactca gaggcctacc
961 tgaaatacat tgaaggactc agtgcggagt ccaacagcat tagcaagtgg gatcagacac
1021 tggcagctcg aagacgcgac gtccatttgt cgaaagaaca ggagagccgc ctaccctctc
1081 actggctgaa aagcaaaggg gcccacacca ccatggcaga tgccctctgg cgccttcgag
1141 atttgatgct ccgggacacc ctcaacattc gccaagcata caacctagaa aatgtttaat
1201 cacatcatta cgtttctttt atatagaagc ataaagagtt gtggatcagt agccatttta
1261 gttactgggg gtggggggaa ggaacaaagg aggataattt ttattgcatt ttactgtaca
1321 tcacaaggcc atttttatat acggacactt ttaataagct atttcaattt gtttgttata
1381 ttaagttgac tttatcaaat acacaaagat ttttttgcaa aaaaaaaaaa aaaa
//