LOCUS BC015117 1078 bp mRNA linear HUM 02-MAR-2004
DEFINITION Homo sapiens DEP domain containing 4, mRNA (cDNA clone
IMAGE:3684087), partial cds.
ACCESSION BC015117
VERSION BC015117.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1078)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1078)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 31 Row: b Column: 11.
FEATURES Location/Qualifiers
source 1..1078
/db_xref="H-InvDB:HIT000088558"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3684087"
/tissue_type="Bladder, carcinoma"
/clone_lib="NIH_MGC_53"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene <1..1078
/gene="DEPDC4"
/gene_synonym="DEP.4"
/gene_synonym="FLJ33505"
/db_xref="GeneID:120863"
CDS <1..788
/gene="DEPDC4"
/gene_synonym="DEP.4"
/gene_synonym="FLJ33505"
/codon_start=3
/product="DEPDC4 protein"
/protein_id="AAH15117.1"
/db_xref="GeneID:120863"
/translation="GNGPSSRNRRDGFCRKRRTGCSGPFQATQLWDGIIHSLQAQVEI
KRRRHHLQTYKDCFTGSDAVDVVLSHLMQNTCLSSNDISCLKGVHLCQVLMNHKVFEP
VGMKKLFKKEKELEFEDSNISLYRFLGNKSSYDCCKRQKDAENEFNETLRPGYEMISN
PLAQEIGEERIEELIHTINGNPALCPNITVQKPFLRLSKEDVWKEQTLLCLLQLIHLP
FLDNILEPPVKTQNLQLNKEEDLVITNTCLDRELIPSLCLPEK"
misc_feature 114..314
/gene="DEPDC4"
/gene_synonym="DEP.4"
/gene_synonym="FLJ33505"
/note="DEP; Region: Domain found in Dishevelled, Egl-10,
and Pleckstrin"
/db_xref="CDD:smart00049"
BASE COUNT 384 a 190 c 202 g 302 t
ORIGIN
1 gggggaacgg gccaagttcc aggaaccgta gagatggctt ctgccggaaa aggaggacag
61 gatgctctgg tccttttcaa gctactcagc tatgggatgg tattattcac tctcttcagg
121 cccaagtgga aataaaaaga aggaggcatc atttacagac atacaaagac tgtttcactg
181 gttctgatgc tgtcgatgtg gtcttaagtc atcttatgca aaacacgtgc ctaagtagca
241 atgacatctc ttgtcttaaa ggggttcatc tttgccaagt tctaatgaat cacaaagtat
301 ttgaaccagt aggaatgaag aagcttttca aaaaagaaaa ggaattagaa tttgaagatt
361 ccaacattag tctctacagg tttctaggca ataaatcatc ttacgattgt tgcaaaagac
421 aaaaggatgc tgagaatgag ttcaatgaaa ccttgagacc aggatatgaa atgatttcaa
481 atcctctagc acaggagatt ggtgaggaaa gaattgagga acttattcat acaataaatg
541 ggaatccagc tttatgtcca aatatcacag ttcagaaacc ttttctccgg ctttcaaaag
601 aagatgtttg gaaagaacaa acattattat gtcttcttca attgattcac cttccattct
661 tggacaatat tttggagcct ccagttaaaa cacaaaatct tcaactaaac aaagaggaag
721 atcttgttat cactaacact tgcctagaca gagaacttat tccaagctta tgtctacctg
781 aaaaatgaga aaagagcaga agcacttgaa gcaacacaac tatatctaag attgctgttg
841 ctgaacatta gagaagaatt acgacggcta cttactttta tggcaatggc atcagagccc
901 aatgcctaca agttgcaaaa acaggtgaaa aattttgcaa taagttttgc catttttttt
961 gctatttttt tcctctaaaa accatttatg ctaatgttaa tctttctgtt tacagtatga
1021 taataaaaca gtggtcctga aaactcttga caaaaaaaaa aaaaaaaaaa aaaaaaaa
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