LOCUS BC015030 2816 bp mRNA linear HUM 13-JUN-2005
DEFINITION Homo sapiens zinc finger, BED-type containing 1, mRNA (cDNA clone
MGC:9091 IMAGE:3908412), complete cds.
ACCESSION BC015030
VERSION BC015030.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2816)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2816)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: d Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41282247.
FEATURES Location/Qualifiers
source 1..2816
/db_xref="H-InvDB:HIT000036971_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9091 IMAGE:3908412"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2816
/gene="ZBED1"
/gene_synonym="KIAA0785"
/gene_synonym="TRAMP"
/db_xref="GeneID:9189"
/db_xref="MIM:300178"
CDS 283..2367
/gene="ZBED1"
/gene_synonym="KIAA0785"
/gene_synonym="TRAMP"
/codon_start=1
/product="ZBED1 protein"
/protein_id="AAH15030.1"
/db_xref="GeneID:9189"
/db_xref="MIM:300178"
/translation="MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKK
IYCRICMAQIAYSGNTSNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESS
QQPGQDALAVKAGHGYDSKKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRY
ELPSRKYISTKAIPEKYGAVREVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFL
GLGAPNCLSMGSRCLKTFEVPEENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIV
KACSLLDVAVHMPCLGHTLNAGIQQAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYE
KQKQQNVAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGVLVEDSNNHHLMLEASEWA
TIEGLVELLQPFKQVAEMLSASRYPTISMVKPLLHMLLNTTLNIKETDSKELSMAKEV
IAKELSKTYQETPEIDMFLNVATFLDPRYKRLPFLSAFERQQVENRVVEEAKGLLDKV
KDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLAEIFCQTGGVEDQEEWHA
QVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPLLPKVLQKYWCVTATRVAPERLFGS
AANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPEDQDEGEWGLDQEQVFSLGDGVS
GGFFGIRDSSFL"
BASE COUNT 601 a 890 c 877 g 448 t
ORIGIN
1 cgcctgtccc gggtcgggct ccaaccaagc agcccccgtg cagccgcccc cccgcgcacc
61 ctgacacctc cgggccatgg ccggggaccc gggggctcgc acgccccgcg cccaagacat
121 caggcggctc tgcctgccgc ctgcggtcgg ccagtgaccg cgcgcccccg ccaggccccg
181 gaggggagga gcgggcgtcc cagggacctc gacccctacc caccccaggc aggtccccac
241 gcatgagcag ccgtccagca ggcaggctcc ggtggagaag caatggagaa taaaagcctg
301 gagagctccc agacagacct gaagctggtg gcccaccccc gcgccaagag caaggtgtgg
361 aagtatttcg gcttcgacac caacgccgag ggatgcatcc tgcagtggaa gaaaatctac
421 tgccgcatct gcatggccca gatcgcctac tccggaaaca cctccaacct gtcctaccac
481 ctggagaaga accaccccga ggaattctgc gagttcgtca agagcaacac ggagcagatg
541 cgtgaagcct tcgccaccgc cttctccaag ctgaagcccg agtcgtccca gcagcccggg
601 caggatgcgc tggccgtcaa ggccggccac ggctacgaca gcaagaagca gcaggagctg
661 acggccgccg tgctgggcct catctgcgag gggctgtacc cagcctccat cgtggacgag
721 cccaccttca aggtgctgct gaagacggcc gacccccggt atgagctgcc cagccggaag
781 tacatctcta ccaaggccat ccctgagaag tacggggccg tccgggaggt gatcctgaag
841 gagctggccg aggccacctg gtgtggcatc tccaccgaca tgtggaggag tgagaatcag
901 aaccgcgcct acgtcacgct ggccgcccac ttcctgggcc tgggcgcccc caactgcctg
961 tccatgggct cccgctgcct gaagaccttc gaggtgcccg aagagaacac ggcggagacc
1021 atcacgcgag tgctctatga ggtcttcatc gagtggggca tcagcgccaa ggtcttcggg
1081 gccaccacca actatggcaa ggacatcgtg aaggcgtgct ccctgctgga cgtcgcagtg
1141 cacatgccct gcctgggcca caccctcaat gccggcatcc agcaggcctt ccagctcccg
1201 aagctggggg cgctgctgtc gcgctgccgc aaactggtgg agtacttcca gcagtctgcc
1261 gtggccatgt acatgctcta tgagaagcag aagcagcaga acgtggccca ctgcatgctg
1321 gtgagcaacc gcgtctcctg gtgggggagc acgctggcca tgctgcagcg cctcaaggag
1381 cagcagttcg tcatcgccgg ggtcttggtg gaggacagca acaaccacca cctcatgctg
1441 gaggccagcg agtgggccac catcgagggg ctggtggagc tcctgcagcc cttcaagcag
1501 gtggccgaga tgctgtcggc ctccaggtac cccaccatca gcatggtgaa gccgctgctg
1561 cacatgctcc tgaacaccac gctcaacatc aaggagaccg actccaagga gctcagcatg
1621 gccaaggagg tcatcgccaa ggagctttcc aagacctacc aggagacgcc cgagatcgac
1681 atgtttctca acgtggccac cttcctggac ccccgctaca agaggctgcc cttcctctcc
1741 gccttcgagc ggcagcaggt ggagaatcgc gtggtggaag aggccaaggg cctgctggac
1801 aaggtcaaag acggcggcta ccggccggct gaggacaaga tcttcccggt gcccgaggag
1861 cctcccgtca agaagctcat gcggacatcc acgccgccgc ccgccagcgt catcaacaac
1921 atgctggccg agatcttctg ccagacaggc ggcgtggagg accaggaaga gtggcatgcc
1981 caggtggtgg aggagctgag caacttcaag tcccagaagg tgcttggcct caacgaagac
2041 cccctcaagt ggtggtcaga ccgcctggcc ctcttccccc tgctgcccaa ggtgctgcag
2101 aagtactggt gcgtgacggc cacgcgcgtc gcccctgagc gtctcttcgg atccgccgcc
2161 aacgtggtca gcgccaagag gaaccggctg gctcccgcgc acgtggacga gcaggtgttt
2221 ctgtatgaga acgcccggag tggggcagag gcggaacccg aggaccagga cgagggggag
2281 tggggcctgg accaggagca ggtgttctcc ttgggggatg gcgtcagcgg cggtttcttt
2341 ggcattaggg acagcagctt cctgtagcga ggaagcgtgt tgtcttacaa gtcatccccg
2401 cagcagccca ttggatgctt tgctgtaaat acttacccgg tcagcttggt tttgaacctc
2461 agagaccatc cactgtcttt gacacctaga aggtggaaaa aggaaagaga ttcgagaagt
2521 gagagagggt cgggggcggt ggctcctgtc tataatcgca gcactttggg aggccgaggt
2581 gggcagatca gctgaggtca ggagatcgag accagcctgg ccaacatggc gaaaccccgt
2641 ctctactaaa aatacaaaaa ttagccagga ctgatggcat gtgcctgtaa tcccagcttc
2701 tggaggctga ggccagagaa tcgcttgaac ctgggaggtg gaggttgcag taagctgaga
2761 tcgctgcact ccagcctggg cgacaagagc gagactctct caaaaaaaaa aaaaaa
//